SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene6393

Length: 1130 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog2_v2.0_unigene6393 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene22754	2/24
SustainPine v2.0	sp_v2.0_unigene32756	11/24
SustainPine v2.0	sp_v2.0_unigene60465	10/24
SustainPine v2.0	sp_v2.0_unigene61181	1/24

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Putative DnaJ protein n=1 Tax=Camellia sinensis RepID=Q2L989_CAMSI	-	-	6.0e-31	47%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	83%
Blast2go	heat shock protein binding protein	-	-	0.0	66%

Source	GOs	Term	Type	Identity
Blast2go	response to stress	GO:0006950	Biological Process	66%
Blast2go	chloroplast stroma	GO:0009570	Cellular Component	66%
Blast2go	nucleus	GO:0005634	Cellular Component	66%

Source	InterPros	Term	Type	Identity
Sma3	Heat shock protein DnaJ, N-terminal	IPR001623	-	-
Sma3		IPR015609	-	-
Sma3	Heat shock protein DnaJ	IPR003095	-	-

Full-Lengther Next Prediction

SNPs (tot: 4)

Position	A %	C %	G %	T %	Probability
540	80	20			0.995493
542			80	20	0.995493
805	44		55		1.0
920	75			25	0.996473

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain