SustainPineDB

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene6347

Length: 1229 nt

UniGene Fasta

Ace file of the UniGene biog2_v2.0_unigene6347

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene17202	1/74
SustainPine v2.0	sp_v2.0_unigene23864	7/74
SustainPine v2.0	sp_v2.0_unigene26334	16/74
SustainPine v2.0	sp_v2.0_unigene60453	7/74
SustainPine v2.0	sp_v2.0_unigene60565	43/74

Source	Descriptions	Term	Type	Identity
AutoFact	40S ribosomal S4 protein [Glycine max] gb\|ACU21252.1\| unknown [Glycine max]	-	-	82%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	98%
Blast2go	40s ribosomal protein s4	-	-	94%

Source	GOs	Term	Type	Identity
Blast2go	protein binding	GO:0005515	Molecular Function	94%
Blast2go	nucleolus	GO:0005730	Cellular Component	94%
Blast2go	plasma membrane	GO:0005886	Cellular Component	94%
Blast2go	vacuolar membrane	GO:0005774	Cellular Component	94%
Blast2go	cytosolic small ribosomal subunit	GO:0022627	Cellular Component	94%
Blast2go	chloroplast	GO:0009507	Cellular Component	94%

Source	InterPros	Term	Type	Identity
Sma3	KOW	IPR005824	-	-
Sma3	Ribosomal protein S4e	IPR000876	-	-
Sma3	Ribosomal protein S4e, central	IPR013845	-	-
Sma3	Ribosomal protein S4e, N-terminal	IPR013843	-	-
Sma3	Ribosomal protein S4e, N-terminal, conserved site	IPR018199	-	-
Sma3	RNA-binding S4 domain	IPR002942	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NNW1

Fln msg:

Fln protein: MARGLKKHLKRLNAPRHWMLDKLGGAFAPKPSPGPHKGRECLPLVVLLRNRLKYALTYREVIAIVMQRLISVDGKVRTDKCYPAGFMDVLSIAKTNENFRLLYDAKGRFRLHSIKDEEAKYKLCKVRSVQFGDKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLETGKIMEFIKFDVGNVIMVTGGRNRGRVGVIKHREKHKGSFEIIHVQDAAGQEFATRQGNVFTIGKGTKPWVSLPKGKGVKLSIIEEARKRHAAGTAAA*

Protein Length: 265

Fln nts: ATGGGGGTTAAGTTTAGAGGTAAAAGCGCAACTAGGGTTTGGTAAAGGGTATAGGGTTTCAAAGAGTTAAGCCCGTGTTTGAACCCTCAAGATCCTTGATTGGCTGGGTTCATTGATTTCTGCTCCTCCTACTGAATCGATCGTAGAGGTCTTTGCCGCTGTAATTAGATTTGCAGAAGGCGCCGGGCAGGGATCAAGGATTTCTCATCCACCTCATACTGAGCCGATAGCAGAGACATC_-_ATGGCTCGTGGATTGAAGAAACATTTAAAGAGGCTCAATGCTCCCAGGCATTGGATGCTTGACAAACTTGGTGGTGCTTTTGCACCAAAACCATCTCCTGGTCCTCACAAGGGCAGGGAATGCCTGCCTCTTGTGGTTCTTCTTAGGAACAGGCTGAAGTATGCCCTCACATACCGTGAAGTCATAGCCATTGTAATGCAGAGACTTATTTCTGTTGATGGAAAAGTGAGGACAGACAAATGCTATCCTGCAGGGTTTATGGATGTCCTGTCAATTGCAAAAACAAATGAGAATTTTAGGCTTCTTTATGATGCAAAGGGTCGTTTCCGCTTGCATTCAATCAAAGACGAAGAAGCAAAGTATAAACTTTGCAAGGTTCGTTCTGTACAATTTGGAGATAAGGGTATCCCTTACCTCAACACTTATGATGGACGCACAATTAGGTACCCAGACCCATTGATCAAGGCCAATGATACAATTAAGCTTGACCTAGAGACGGGCAAGATCATGGAGTTCATAAAGTTTGATGTTGGTAATGTTATAATGGTTACTGGAGGCCGCAATAGAGGTCGTGTTGGAGTCATTAAGCACAGAGAAAAGCACAAGGGTAGCTTTGAGATTATTCACGTGCAAGATGCCGCTGGGCAGGAATTCGCGACCCGTCAGGGTAATGTGTTCACAATTGGAAAGGGCACAAAGCCATGGGTTTCCTTACCCAAGGGTAAGGGTGTCAAGTTGTCCATCATTGAAGAGGCCAGGAAACGCCATGCAGCTGGAACTGCTGCAGCATAA___ATTTTGTTCATTGGAAAACTCGATGGTTTTGATAGTCAGAATTTGTTAGCCTAGTAAATACTGTCATTATTAGAGAAGATTAGAAGGTTGGGAAAACTTGGTAGCTATCGTTGATTTATGGCTGGAAATCAATGTAGAAGCTAAGTCTAATCGGTCCAAATCTAGCACTAATATTAGAAGGTAGGCCTTGAATCATA

Fln Alignment:

Contig6347___MARGLKKHLKRLNAPRHWMLDKLGGAFAPKPSPGPHKGRECLPLVVLLRNRLKYALTYREVIAIVMQRLISVDGKVRTDKCYPAGFMDVLSIAKTNENFRLLYDAKGRFRLHSIKDEEAKYKLCKVRSVQFGDKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLETGKIMEFIKFDVGNVIMXXXXXXXXXXXXIKHREKHKGSFEIIHVQDAAGQEFATRQGNVFTIGKGTKPWVSLPKGKGVKLSIIEEARKRH
A9NNW1_________________MARGLKKHLKRLNAPRHWMLDKLGGAFAPKPSPGPHKGRECLPLVVLIRNRLKYALTYREVIAIVMQRLISVDGKVRTDKCYPAGFMDVLSIAKTNENFRLLYDAKGRFRLHSIKDEEAKYKLCKVRSVQFGDKGIPYLNTYDGRTIRYPDPLVKANDTIKVDLETGKIKEFIKFDVGNVIMVTGGRNRGRVGVIKHREKHKGSFEIIHVQDAAGQEFATRQGNVFTIGKGTKPWVSLPKGKGVKLSIIEEARKRH

SNPs (tot: 4)

Position	C %	G %	T %	Probability
660	13		86	0.999973
897		84	16	1.0
1153		66	33	1.0
1177	16	83		0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain