SustainPineDB

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene6344

Length: 1182 nt

UniGene Fasta

Ace file of the UniGene biog2_v2.0_unigene6344

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene15688	54/73
SustainPine v2.0	sp_v2.0_unigene15960	19/73

Source	Descriptions	Term	Type	Identity
AutoFact	40S ribosomal protein S8 n=4 Tax=Picea sitchensis RepID=A9NNT7_PICSI	-	-	74%
FL-Next	sp=40S ribosomal protein S8; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	97%
Blast2go	40s ribosomal protein s8	-	-	88%

Source	GOs	Term	Type	e value	Identity
Blast2go	intracellular part	GO:0044424	Cellular Component	0.0	88%

Source	InterPros	Term	Type	e value	Identity
Sma3	Ribosomal protein S8e	IPR001047	-	0.0	-
Sma3	Ribosomal protein S8e, conserved site	IPR018283	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NNT7

Fln msg: Separated hits, possible frame ERROR between 610 and 688,

Fln protein: MGISRDSLHKKRATGGKKKVWRKKRKYELGRQPSMTKLSSNKTVRRVRVRGGNVKWRALRLDTGNFSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIIQVDAAPFRQWYELHYGQDIGxxxxxxxxxxxxxxxxxxxxxxxxxxxKSKHLLRKIEKRQEGHKLDTHLEEQFASGRLLAAISSRPGQCGRADGYILEGRELEFYMKKIQRKKGKGAGAA*

Protein Length: 225

Fln nts: ATGGGGCATGAAGTAATAAAATACCGATAATATGTGGAAAGGAGCAAAGCAGGTCAAAGGTATATTCTTTGACCTGGCTGGCATACGCAAACCCTAGTCTTGGTATACTGTATACTGGGTTTCATCTCACTTCCATCGCCGTTTATGTTCTTTCGTTCCTCGTCTTCCCTCTCGGACATAGGTATAGGGTTGCGGCGGTGCGGTCCGATCTGCAGGGTTTCTGGTCGATTCTGAAACA_-_ATGGGTATCTCACGGGATTCACTTCACAAGAAACGTGCGACTGGAGGGAAGAAGAAGGTGTGGAGGAAGAAGCGAAAGTATGAGTTGGGCAGACAGCCTTCAATGACGAAACTGTCGAGTAACAAGACCGTGAGAAGGGTGCGTGTGAGAGGAGGTAATGTAAAGTGGAGGGCTTTGAGACTCGATACTGGTAACTTTTCTTGGGGTTCTGAGGCTGTGACTCGCAAGACTCGTATATTAGATGTGGTTTACAATGCATCTAATAACGAGCTTGTCAGGACCCAGACTTTGGTAAAGAGTGCCATCATTCAGGTTGATGCTGCTCCTTTCCGTCAGTGGTATGAGCTGCACTACGGTCAGGATATTGGCAGxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxAAAAAGCAAACATCTTTTGAGGAAGATCGAGAAGCGACAAGAAGGTCACAAACTTGACACACATCTGGAAGAGCAATTTGCTAGTGGTCGGCTTTTGGCTGCAATTTCTTCACGTCCAGGCCAGTGTGGACGTGCTGATGGGTATATTCTTGAGGGTCGTGAGCTTGAGTTTTACATGAAAAAGATTCAGAGAAAGAAGGGAAAGGGAGCTGGTGCTGCTTAA___AAGCAAGCAAATTTTGGTTCTTGAGACACTTAGCAAGATTAATGAATAATCTTGCTCTGTTCACAATGTTCAGTGTTGCCCCCAAGTAAACATCAAAAGAGCTTTATAGTTAGGATTGAGGATAATTTTTGTGGTCACGGGTCATGGTTCTATTTTCAACTGAGCAGAGTATAGTAATTACAAATTTGTTAGATAGCTGGATTTAATTATTTCTAATGGAATGTCAGACTGAAGAACAATTTGAAGCGTCACGTAAGATTGCTAATCTGCTGA

Fln Alignment:

Contig6344___MGISRDSLHKKRATGGXXXXXXXXXXYELGRQPSMTKLSSNKTXXXXXXXXXXXKWRALRLDTGNFSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIIQVDAAPFRQWYELHYGQDIGRxxxxxxxxxxxxxxxxxxxxxxxxxxKSKHLLRKIEKRQEGHKLDTHLEEQFASGRLLAAISSRPGQCGRADGYILEGRELEFYMKKIQR
A9NNT7_________________MGISRDSLHKKRATGGKKKVWRKKRKYELGRQPSMTKLSSNKTVRRVRVRGGNVKWRALRLDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIIQVDAAPFRQWYEQHYGLDIGRxxxxxxxxxxxxxxxxxxxxxxxxxxKSKHLLKKIEKRQEGHKLDSHLEEQFASGRLLAAIASRPGQCGRADGYILEGRELEFYLKKIQR

SNPs (tot: 8)

Position	A %	C %	G %	T %	Probability
400	14		85		0.993533
401	85		14		0.993533
421		14		85	0.993533
473	88		11		0.923564
496	12		87		0.992554
716		83		16	0.994512
845		25		75	0.996473
899	50			50	1.0

SSRs (tot: 1)

Start position	End position	Sequence	Length
620	633	GCT GCT GCT GCT GC	14

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain