SustainPineDB

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene6307

Length: 1188 nt

UniGene Fasta

Ace file of the UniGene biog2_v2.0_unigene6307

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene15732	41/146
SustainPine v2.0	sp_v2.0_unigene23986	1/146
SustainPine v2.0	sp_v2.0_unigene60338	101/146
SustainPine v2.0	sp_v2.0_unigene60443	2/146
SustainPine v2.0	sp_v2.0_unigene81976	1/146

Source	Descriptions	Term	Type	Identity
AutoFact	ADP-ribosylation factor [Medicago sativa] emb\|CAI29265.1\| ADP-ribosylation factor 1 [Medicago truncatula]	-	-	99%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	100%
Blast2go	adp-ribosylation factor	-	-	99%

Source	GOs	Term	Type	Identity
Blast2go	protein ADP-ribosylation	GO:0006471	Biological Process	99%
Blast2go	vesicle-mediated transport	GO:0016192	Biological Process	99%
Blast2go	intracellular protein transport	GO:0006886	Biological Process	99%
Blast2go	nucleotide binding	GO:0000166	Molecular Function	99%
Blast2go	intracellular membrane-bounded organelle	GO:0043231	Cellular Component	99%
Blast2go	cytoplasmic part	GO:0044444	Cellular Component	99%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: C0PPL2

Fln msg:

Fln protein: MGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANKA*

Protein Length: 183

Fln nts: ACCTTTGCCCCGCAAAAGGCGGTTTGTTCACACGCAACGCCATCACGGTAGCAGACTACTGTAACCACAGTCAACCGTCCGATCGACGAGCGAAGGAACCTATTTCTTCCCGCAAGTCTCTATATCCAGCCCTCCTCCTCCCCTTTTCGGCAGCAGTGCTAGGTGTGCGAGAGGCGTCTCAGATCTCTTTGCGGGGAGCCATTCTTGTCCCCTCGAATCTCAGATCTGACCCTTCAACTCGGGATCTCTAACAGGTGGTCAAG_-_ATGGGACTCACTTTTACCAAGCTTTTTAGTCGGCTCTTCGCAAAGAAGGAAATGCGCATTCTGATGGTTGGTCTCGATGCCGCTGGTAAGACGACCATCTTGTATAAGCTGAAGCTGGGAGAAATCGTTACGACCATCCCTACCATCGGATTCAATGTGGAAACCGTCGAGTACAAGAACATCAGCTTCACTGTGTGGGATGTTGGGGGTCAGGACAAGATCCGTCCACTTTGGAGACACTACTTCCAAAATACTCAGGGTCTCATCTTTGTGGTTGATAGCAATGATAGAGACCGTGTTGTAGAAGCAAGGGATGAACTACATAGAATGCTGAATGAGGATGAACTACGTGATGCTGTATTGCTTGTGTTCGCAAATAAGCAAGATCTTCCAAATGCTATGAATGCTGCAGAGATAACTGACAAACTTGGGCTGCATTCCCTCAGGCAGCGCCACTGGTATATCCAAAGCACTTGTGCCACTTCTGGCGAGGGCTTGTATGAGGGCTTGGATTGGCTCTCTAACAACATTGCAAACAAGGCTTGA___AGAAATATGGTGAACTGGGTTCCTGGAATTTTGTAGGGCAATGTCGTCTTATTTCATTTTTGTCAGAGACAGTTTGAAGAAATAAGTGCAGTCAAACTGACTTTTGACTACTATTCAATTTCTTCTATGGGTTTGATTGTGCCAATCTGCTAGGAATGAACTAATTTATATATAGCTCATTATGCTTAAATGGCAAAGCATGAGTAGTTATTATAAATGTATTTGATGATTATGATATTGCCTTTTGTGTGGGGAGCATAGACATTACTATAGGAATGTTCCGGCTGATTTGAAACTTGTATTCTTATTTCTAGCTTTATTGTCTCATATTACACTCAAATTCATTCTACCAGATAATAAATACACAGGTTGGTTTAGT

Fln Alignment:

Contig6307___MGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANKA
C0PPL2_________________MGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANKA

SNPs (tot: 11)

Position	A %	C %	G %	T %	Probability
59		66		33	0.997452
60			33	66	0.997452
62			33	66	0.997452
130			80	20	0.995493
131		80	20		0.995493
132		80	20		0.995493
133		80	20		0.995493
134			20	80	0.995493
168			80	20	0.995493
232		80		20	0.995493
1016	90		9		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain