SustainPineDB

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene6295

Length: 1228 nt

UniGene Fasta

Ace file of the UniGene biog2_v2.0_unigene6295

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene6668	47/48

Source	Descriptions	Term	Type	Identity
AutoFact	urease accessory protein G [Solanum tuberosum]	-	-	84%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	94%
Blast2go	urease accessory protein	-	-	92%

Source	GOs	Term	Type	Identity
Blast2go	positive regulation of metalloenzyme activity	GO:0048554	Biological Process	92%
Blast2go	nitrogen compound metabolic process	GO:0006807	Biological Process	92%
Blast2go	ATP binding	GO:0005524	Molecular Function	92%
Blast2go	nickel cation binding	GO:0016151	Molecular Function	92%
Blast2go	cytoplasm	GO:0005737	Cellular Component	92%
Blast2go	integral to membrane	GO:0016021	Cellular Component	92%

Source	InterPros	Term	Type	Identity
Sma3	Cobalamin (vitamin B12) biosynthesis CobW-like	IPR003495	-	-
Sma3	[NiFe]-hydrogenase/urease maturation factor, Ni2-binding GTPase	IPR012202	-	-
Sma3	Urease accessory protein UreG	IPR004400	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NNA6

Fln msg:

Fln protein: MASEDITMLPAHSHDHQHHHHDDEHDHDHHHSDTKAATSWIGPDGRKFHSHDGLAPHSHEPLYSPGYFSRRTARLTNRDFKERAFTIGIGGPVGSGKTALMLALCQLLRDKYSIAAVTNDIFTKEDGEFLVKHGALPTERIRAVETGGCPHAAIREDISINLGPLEELTNLFTVDILLCESGGDNLAANFSRELADYIIYIIDVSGGDKIPRKGGPGITQADLLVINKTDLAQAVGADLKVMEQDSLRMRDGGPFVFAQVKHGVGIQEIVDNILQSWEESTQQKRR*

Protein Length: 288

Fln nts: ATGGGGAAGATGGACTGTTGTGATGCTTACAGTATTATAAACAAACAGTAATCGATTCCAATAGCGGAATCGTTGTCGTCAGCACAATTaTTTTAAAATTTGTGGTGGGTATTTATGTAGATGGACCGCTTTCAAAATGGGGCAGTCAAGCGAGCTTTGATAA_-_ATGGCGTCCGAAGATATTACAATGCTGCCTGCTCATTCTCACGACCACCAGCATCATCACCACGACGATGAACATGACCACGATCACCATCACTCGGATACAAAAGCAGCTACATCATGGATTGGTCCTGATGGCCGGAAATTTCATTCACATGATGGATTAGCTCCCCACTCACATGAACCATTGTATTCTCCAGGCTATTTCAGTCGGAGGACTGCAAGGCTTACAAATAGGGATTTTAAAGAACGAGCTTTTACCATTGGCATTGGTGGACCAGTTGGCTCTGGGAAAACTGCTTTGATGCTCGCACTATGTCAACTCCTGCGAGACAAGTATAGCATTGCTGCAGTTACAAATGATATTTTTACTAAAGAAGATGGTGAATTCCTGGTGAAGCATGGTGCTCTTCCTACAGAAAGGATTCGTGCTGTCGAGACTGGTGGTTGTCCACATGCTGCCATTAGAGAAGATATTAGTATTAATTTAGGTCCTCTTGAAGAGTTGACAAACCTGTTCACAGTGGACATACTTCTTTGTGAATCTGGAGGAGATAATCTTGCTGCAAACTTCAGCAGGGAACTTGCAGACTATATAATCTACATCATTGATGTTTCTGGAGGTGATAAAATTCCTCGGAAGGGTGGACCAGGGATTACCCAGGCAGACCTTCTTGTCATTAACAAGACTGATCTTGCACAAGCAGTTGGAGCTGACTTGAAAGTTATGGAGCAGGATTCACTTCGTATGCGTGATGGAGGACCCTTTGTTTTTGCACAGGTAAAGCATGGTGTTGGGATTCAAGAGATAGTTGATAATATACTTCAATCTTGGGAAGAATCTACACAACAGAAGAGGAGATGA___ATTTGAAGAAATGGCATCACTAGAAGTATAATAAGATTCTCGTAATCTTAAACGTGAAATTCTGTAATAGCATTTAAAACTTCAGTGAATTCAATGGATATGGATATTAAACAATTGATTGGTTTCCTTCACAAGTCAAAACATGGTTTACACAATTTCAGAAGAAATTCCTAATCAGATGATATTTCAATAATTTTCATTGAT

Fln Alignment:

Contig6295___MASEDITMLPAXXXXXXXXXXXXXXXXXXXXXXTKAATSWIGPDGRKFHSHDGLAPHSHEPLYSPGYFSRRTARLTNRDFKERAFTIGIGGPVGSGKTALMLALCQLLRDKYSIAAVTNDIFTKEDGEFLVKHGALPTERIRAVETGGCPHAAIREDISINLGPLEELTNLFTVDILLCESGGDNLAANFSRELADYIIYIIDVSGGDKIPRKGGPGITQADLLVINKTDLAQAVGADLKVMEQDSLRMRDGGPFVFAQVKHGVGIQEIVDNILQSWEESTQQKRR
A9NNA6_________________MASEDIAMLSAHSHDHHHHDHDDDHDHDHHHSDTKAATSWVGPDGRKFHSHDGLAPHSHEPLYSPGYFSRRAGRLTNRDFKERAFTIGIGGPVGSGKTALMLALCQILRDKYSIAAVTNDIFTKEDGEFLVKHGALPTERIRAVETGGCPHAAIREDISINLGPLEELTSLFTADILLCESGGDNLAANFSRELADYIIYIIDVSGGDKIPRKGGPGITQADLLVINKTDLAQAVGADLKVMERDSLRMRDGGPFVFAQVKHGVGIQEIVDNVLQSWEESTQEKRK

SNPs (tot: 3)

Position	A %	C %	G %	T %	Probability
510		75		25	0.996473
702		23		76	1.0
750	50		50		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain