SustainPineDB

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene6252

Length: 1325 nt

UniGene Fasta

Ace file of the UniGene biog2_v2.0_unigene6252

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene13117	12/66
SustainPine v2.0	sp_v2.0_unigene30742	53/66

Source	Descriptions	Term	Type	Identity
AutoFact	Xyloglucan endotransglucosylase/hydrolase protein 9, putative n=1 Tax=Ricinus communis RepID=B9S9N2_RICCO	-	-	59%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	87%
Blast2go	xyloglucan endotransglucosylase hydrolase protein 9	-	-	79%

Source	InterPros	Term	Type	Identity
Sma3	Glycoside hydrolase, family 16	IPR000757	-	-
Sma3	Integrase, catalytic core	IPR001584	-	-
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3	Glycoside hydrolase, family 16, active site	IPR008263	-	-
Sma3	Beta-glucanase	IPR008264	-	-
Sma3	Xyloglucan endo-transglycosylase, C-terminal	IPR010713	-	-
Sma3		IPR013084	-	-
Sma3	Reverse transcriptase, RNA-dependent DNA polymerase	IPR013103	-	-
Sma3	Concanavalin A-like lectin/glucanase, subgroup	IPR013320	-	-
Sma3	Xyloglucan endotransglucosylase/hydrolase	IPR016455	-	-
Sma3	Carbohydrate kinase, FGGY, conserved site	IPR018483	-	-
Sma3	DNA topoisomerase, type IIA, conserved site	IPR018522	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5A9T0

Fln msg:

Fln protein: MALVLVGCQEGGRIMQCSVLCICVTLCSLLAGSQCASFDDFFYPSWAVDHVMSQGELLQLKLDNISGAGFASKSTYIFGKANVQIKLVPGDSAGTVTAFYMSSQGDQHDEFDFEFLGNTSGEPYAVQTNVYSKGVGNREQRIFLWFDPTADFHSYSFLWNRQQVVFFVDDVPVRIFSNNEKRGVPYPQTQPMGVYSSIWNADDWATQGGLVKTDWSHAPFISTYKNFSIDACQYSSKTSCSSWWDEPAYASLDAKQRLKLKWVHEKYMTYDYCKDSARFPTPPAECE*

Protein Length: 289

Fln nts: ATGGGGATTGAACTCTGATTCATTTCCACTGGCTTGATACACAATCCGGTCGAATCGAGTTTGAGTTTGAGT_-_ATGGCACTGGTATTGGTAGGTTGTCAAGAAGGGGGGCGTATCATGCAGTGCTCTGTTCTTTGTATCTGTGTAACGCTGTGCAGCCTGCTAGCGGGCTCTCAATGTGCGTCCTTCGACGATTTCTTCTACCCCAGTTGGGCTGTTGATCATGTCATGTCCCAAGGGGAGTTGCTCCAGCTCAAACTTGATAACATTTCTGGTGCAGGATTTGCTTCTAAGAGCACATACATCTTCGGAAAAGCAAATGTGCAGATTAAGCTCGTTCCCGGGGACTCTGCTGGCACTGTTACTGCATTCTATATGTCTTCCCAAGGCGATCAACATGACGAATTCGACTTTGAATTTTTGGGGAACACTTCTGGGGAGCCGTACGCTGTGCAGACTAACGTTTATTCAAAAGGAGTTGGCAACAGAGAACAGCGTATTTTCTTATGGTTCGACCCAACTGCAGACTTCCATTCCTATTCCTTTCTCTGGAATCGCCAGCAAGTTGTTTTCTTTGTAGATGATGTGCCCGTACGGATATTTTCCAACAATGAGAAAAGAGGAGTCCCGTATCCTCAAACTCAACCGATGGGCGTTTACTCCTCTATATGGAACGCAGACGATTGGGCTACTCAAGGTGGCCTCGTCAAGACGGATTGGAGCCACGCGCCTTTCATTTCCACATACAAGAATTTCAGCATTGATGCCTGTCAGTATTCCTCGAAAACGAGCTGCTCTTCGTGGTGGGATGAACCTGCTTACGCTTCTCTTGATGCAAAGCAGAGGCTGAAACTGAAATGGGTACACGAGAAATACATGACTTACGATTACTGCAAGGATTCAGCCAGATTTCCCACTCCTCCAGCGGAGTGTGAATGA___AAAGCCCTTTTTAAACTTGAGCTCTCATCAAGATCCCTTGATCATATGAGCGATCATTTCTTTGTTATTGCATGCATTCCCCTCAGCTTGGATGGTAGATGGAAATCCCTTGACTGCAGTGGGAGATTCATCATTTTGTAAAAGTGAAGAAACGGAAGTACCTTTCGCTGGCACTGAGTGCAGTGAGATTCATCATTTTGTAAAACGTGCAGAGACAAAGTAATGTGTTTAGTGGGGTGACAAAAGCAGCTCACATTTGAGGGCTAGTATGTATGAGGTGTACGAGGATTTACGAGAGAAGAGAAGCTTGTCTCTCTTCTCAGTATGTGTATTATGTGCAGTGACATGAAAGAATATATGAAGTGCCCTCCAGAGCAGAATATTATGCC

Fln Alignment:

Contig6252___GCQEGGRIMQCS-VLCICVTLCSLLAGSQCASFDDFFYPSWAVDHVMSQGELLQLKLDNISGAGFASKSTYIFGKANVQIKLVPGDSAGTVTAFYMSSQGDQHDEFDFEFLGNTSGEPYAVQTNVYSKGVGNREQRIFLWFDPTADFHSYSFLWNXXXXXXXXXXXXXXIFSNNEKRGVPYPQTQPMGVYSSIWNADDWATQGGLVKTDWSHAPFISTYKNFSIDACQYSSKTSCSSWWDEPAYASLDAKQRLKLKWVHEKYMTYDYCKDSARFPTPPAEC
D5A9T0_________________GREEGGRIMHWPCVLSSIVMLCSLVVGSQCAAFNDFFYPSWALDHVMYEGELLKLRLDNTSGAGFASKSTYIFGKVNVQIKLVPGDSAGTVTAFYMSSQGDQHDEFDFEFLGNTSGEPYAVQTNVFSKGVGKREQRIFLWFDPTADFHSYSFLWNRQQVVFFVDDVPIRVFLNNEKVGVPYPQTQPMGVYSSIWNADDWATQGGLVKTDWSHAPFVSTYKNFSIDACEYPSTTSCSSWWDQPAYASLDAKQRLKLKWVQEKYMTYDYCRDSGRFATPPAEC

SNPs (tot: 5)

Position	A %	C %	G %	T %	Probability
683			20	80	0.995493
803		12		87	0.992554
824		10		90	0.90298
826		20		80	0.999996
939	87		12		0.999964

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain