SustainPineDB

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene6240

Length: 1189 nt

UniGene Fasta

Ace file of the UniGene biog2_v2.0_unigene6240

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene16706	67/67

Source	Descriptions	Term	Type	Identity
AutoFact	Ubiquitin carrier protein n=1 Tax=Picea sitchensis RepID=A9NPX2_PICSI	-	-	89%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	96%
Blast2go	ubiquitin-conjugating enzyme e2	-	-	95%

Source	GOs	Term	Type	e value	Identity
Blast2go	protein ubiquitination	GO:0016567	Biological Process	0.0	95%
Blast2go	ligase activity	GO:0016874	Molecular Function	0.0	95%

Source	InterPros	Term	Type	e value	Identity
Sma3	Ubiquitin-conjugating enzyme/RWD-like	IPR016135	-	0.0	-
Sma3	Ubiquitin-conjugating enzyme, E2	IPR000608	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NPX2

Fln msg:

Fln protein: MSRMGDCQANLLLRRQLKELSRHPLDGFSAGLVDDSNVFEWNVTIIGPPDTIYEGGYYNAIMTFPPNYPNSPPTVRFTSEMWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVETILLSIISMLSSPNDESPANIDAAKEWRDHRDEFRKKVSRIVRKSQEML*

Protein Length: 172

Fln nts: ATGGGAATGTGATTCCTATTATTTAATTGCATTCGATCTGGCTCCCCGTGCCCGATTCTATTCTCTTCCCTGCGCTTCAATTCTCACGTTTCGTTCCTGATAAAATTCTTTCAGATGACCAGAAGAGAGAATTGAGGGACTGGGGGAGCTCAGGTCTGGCAATTGGAGGTGCCCCAAGAAGATTTTGCATACCAGCAGTCCTGTCTCTCTGCCATTTTAGCGATTTCTCCTCTGTTTTGTCTGGAGATAGATATCGCTCCCCTGAACAAAGGAACTTTTTCGTGGAATTCAAGGATTTAGAGGACGGAAAAGGGTCGG_-_ATGTCCAGAATGGGAGATTGCCAAGCAAATCTTCTGCTGAGAAGACAACTCAAAGAACTGTCGAGGCATCCATTGGACGGTTTCTCAGCTGGACTTGTAGACGACTCCAATGTTTTTGAATGGAATGTGACAATTATTGGACCTCCGGATACAATCTATGAAGGTGGATATTATAACGCGATCATGACTTTTCCACCTAACTACCCAAACAGTCCACCAACAGTCAGGTTTACATCAGAAATGTGGCATCCAAATGTTTATCCAGATGGACGTGTTTGCATTTCTATCCTTCACCCACCTGGTGATGATCCAAATGGCTATGAATTGGCAAGTGAACGGTGGATGCCTGTCCACACGGTTGAAACCATTCTCTTGAGCATCATATCAATGCTTTCTAGTCCAAATGATGAATCGCCTGCCAACATTGATGCAGCGAAGGAATGGCGGGATCATAGAGATGAATTCAGGAAGAAGGTCAGTCGCATTGTCAGGAAATCACAGGAAATGTTATGA___GACTTAATAATTATCATGGAATTTTGAACAGCATTCTTTGGAATGCTGGCAAGCTAATTTCTTCATGATGTTTCCATACCTAGCGATATTTATGTGACGTGTGTCTTTAGTAGCATGGATGAAACATGGAAAGTCCATATATTTGTGTAGTTTGCTCTATCAGATATGATGGATTTAATATACATACAATATTGTAAAATGCTTGCATAGCTACTGTGGTTGATTTCATTTTGTGTTAGAAAGGAGTTCTCAGGTACAGTCATTGCCAAACAAATCAATTATTATTCATTGATTTGCACCTTTTGATTTCATATCTTTGACATTCTATGAACTCAATGGATGAACCAGAGTTTGTGAC

Fln Alignment:

Contig6240___MGDCQANLLLRRQLKELSRHPLDGFSAGLVDDSNVFEWNVTIIGPPDTIYEGGYYNAIMTFPPNYPNSPPTVRFTSEMWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVETXXXXXXXXXXXPNDESPANIDAAKEWRDHRDEFRKKVSRIVRKSQEML
A9NPX2_________________MGDFQAILLLRKQLKELSRHPLDGFSAGLVDDSNVFEWNVTIIGPPDTIYEGGYYNAIMTFPPNYPNSPPTVRFTSEMWHPNVYPDGRVCISILHPPGDDPNGYELASERWTPVHTVETILLSIISMLSSPNDESPANIDAAKEWRDHRDEFRKKVGRIVRKSQETL

SNPs (tot: 3)

Position	A %	C %	G %	Probability
736	11	88		0.923564
739		88	11	0.923564
740		88	11	0.923564

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain