SustainPineDB

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene6235

Length: 1519 nt

UniGene Fasta

Ace file of the UniGene biog2_v2.0_unigene6235

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene23701	12/29
SustainPine v2.0	sp_v2.0_unigene23734	3/29
SustainPine v2.0	sp_v2.0_unigene60603	5/29
SustainPine v2.0	sp_v2.0_unigene60638	9/29

Source	Descriptions	Term	Type	Identity
AutoFact	Actin-11 n=180 Tax=Spermatophyta RepID=ACT11_ARATH	-	-	96%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	99%
Blast2go	actin	-	-	99%

Source	InterPros	Term	Type	e value	Identity
Sma3	Actin, conserved site	IPR004001	-	0.0	-
Sma3	Actin-like	IPR004000	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LNW2

Fln msg:

Fln protein: MADAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPILLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYVALDYEQELETAKTSSSLEKSYELPDGQVITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSREITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF*

Protein Length: 379

Fln nts: ATGGGGCTCTCAGTGTAAGCATAGCATTTCATTTCTCGGTGAAGGAAAGGAAAGGAAAGAAGGAAAGAGCTCAGACGACGGGCACTGCACGCCGTCAATTTTCGTCTCTATTTCGCGTTTGCAGTTATCTCGCAATTTAATTGAAG_-_ATGGCTGACGCAGAGGATATCCAGCCCCTTGTCTGTGACAATGGAACTGGAATGGTCAAGGCTGGATTTGCTGGAGATGATGCTCCCAGGGCAGTGTTTCCAAGTATTGTTGGTCGCCCTCGTCATACTGGAGTCATGGTGGGGATGGGGCAGAAGGATGCATATGTAGGTGATGAGGCTCAATCTAAAAGAGGTATTCTTACTTTGAAGTATCCTATTGAGCATGGGATAGTCACCAACTGGGATGATATGGAGAAGATTTGGCATCATACCTTTTACAATGAGTTACGAGTTGCTCCAGAAGAACACCCTATTCTCCTCACCGAAGCACCTTTGAATCCCAAGGCAAACAGAGAGAAGATGACTCAGATTATGTTTGAGACATTCAATACACCTGCAATGTATGTTGCCATTCAAGCTGTTCTTTCTCTTTATGCAAGTGGTCGAACAACTGGTATTGTTCTTGATTCTGGTGATGGTGTCAGCCACACAGTTCCCATATATGAAGGATATGCTCTTCCACATGCTATTCTCAGGCTAGATCTTGCTGGTCGGGATCTGACTGATGCTTTGATGAAGATCCTGACTGAAAGAGGTTATTCATTCACCACTACGGCAGAACGTGAAATTGTTCGTGATATGAAAGAGAAACTTGCTTATGTAGCCCTTGACTACGAGCAGGAGCTTGAGACAGCCAAGACGAGTTCCTCCCTGGAAAAGAGTTACGAGCTTCCTGATGGGCAAGTAATCACCATTGGTGCAGAGCGTTTCAGATGCCCCGAGGTCTTGTTCCAACCTTCGCTAATTGGAATGGAAGCTGCTGGCATTCACGAGACAACATACAATTCCATCATGAAGTGCGACGTGGATATCAGAAAGGATCTGTATGGAAATATTGTTCTCAGTGGAGGATCTACCATGTTTCCTGGTATTGCCGATCGTATGAGCAGGGAGATTACTGCCCTGGCCCCAAGTAGTATGAAGATCAAGGTGGTTGCACCTCCTGAAAGGAAGTACAGTGTCTGGATTGGAGGATCAATCTTGGCATCTCTGAGTACATTCCAACAGATGTGGATTGCCAAGGCTGAGTATGATGAATCTGGTCCGTCAATTGTTCACAGAAAGTGTTTCTAA___TTTTCAGTGGCTTAGTAGTTTTTAGAGTTCCCAAGCAGTATTGCAGTTATTATGAAGTTGAGTAGGTGATCACGGGTATATTATATTCAGCTATTTCGATGCAGTTAGAGTATATAGTCTTGTCATGGTAGAGATGATAGAGGTACATTTTTGCATGGTTGCGTCCTTGTTTGTTGAATGGCAAGATTTTAGCCCGAAATCTGTCGCCCATTTTTTATTTATTTTGTACTGTGTAATAG

Fln Alignment:

Contig6235___MADAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPILLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYVALDYEQELETAKTSSSLEKSYELPDGQVITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSREITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF
B8LNW2_________________MADAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPILLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYVALDYEQELETAKTSSSLEKSYELPDGQVITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKTEYDESGPSIVHRKCF

SNPs (tot: 8)

Position	A %	C %	G %	T %	Probability
377	85	15			1.0
454	84		15		0.999986
548	85			14	0.993533
556			14	85	0.993533
617		20		80	0.995493
667			25	75	0.996473
1228		10		90	0.90298
1314		14		85	0.993533

SSRs (tot: 1)

Start position	End position	Sequence	Length
42	59	AAGGA AAGGA AAGGA AAG	18

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain