SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene6208

Length: 595 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog2_v2.0_unigene6208 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene2644	7/12
SustainPine v2.0	sp_v2.0_unigene7183	5/12

Source	Descriptions	Term	Type	Identity
AutoFact	Probable polygalacturonase non-catalytic subunit JP650 n=3 Tax=Arabidopsis RepID=JP650_ARATH	-	-	47%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	100%
Blast2go	polygalacturonase non-catalytic subunit jp650	-	-	64%

Source	InterPros	Term	Type	Identity
Sma3	BURP domain	IPR004873	-	-
Sma3	Snf7	IPR005024	-	-
Sma3	Zinc finger, LSD1-type	IPR005735	-	-

Full-Lengther Next Prediction

SNPs (tot: 16)

Position	A %	C %	G %	T %	Probability
104	33		66		0.997452
148	33		66		0.997452
173		33		66	0.997452
196	33			66	1.0
230		40		60	1.0
233	40		60		1.0
290	18	81			0.999994
439	75	25			0.996473
440		25	75		0.996473
441	75	25			0.996473
442		25		75	0.996473
443	25	75			0.996473
466	66	33			0.997452
467		33		66	0.997452
468		33		66	0.997452
470	66			33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain