SustainPineDB

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene6189

Length: 1117 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog2_v2.0_unigene6189 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene2924	23/24

Source	Descriptions	Term	Type	Identity
AutoFact	[L] COG1241 Predicted ATPase involved in replication control, Cdc46/Mcm family	-	-	44%
FL-Next	sp=DNA replication licensing factor MCM3 homolog; Arabidopsis thaliana (Mouse-ear cress).	-	-	33%
Blast2go	minichromosome maintenance protein	-	-	78%

Source	GOs	Term	Type	Identity
Blast2go	DNA unwinding involved in replication	GO:0006268	Biological Process	78%
Blast2go	DNA-dependent DNA replication initiation	GO:0006270	Biological Process	78%
Blast2go	DNA-dependent ATPase activity	GO:0008094	Molecular Function	78%
Blast2go	DNA binding	GO:0003677	Molecular Function	78%
Blast2go	ATP binding	GO:0005524	Molecular Function	78%
Blast2go	nucleus	GO:0005634	Cellular Component	78%

Source	InterPros	Term	Type	Identity
Sma3	Mini-chromosome maintenance, DNA-dependent ATPase	IPR001208	-	-
Sma3	DNA methylase, N-6 adenine-specific, conserved site	IPR002052	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	Mini-chromosome maintenance complex protein 2	IPR008045	-	-
Sma3	Mini-chromosome maintenance complex protein 4	IPR008047	-	-
Sma3	Mini-chromosome maintenance complex protein 6	IPR008049	-	-
Sma3	Mini-chromosome maintenance complex protein 7	IPR008050	-	-
Sma3	Nucleic acid-binding, OB-fold	IPR012340	-	-
Sma3	Homeobox, conserved site	IPR017970	-	-
Sma3	Mini-chromosome maintenance, conserved site	IPR018525	-	-

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: sp_plants

Fln subject: Q9FL33

Fln msg: Unexpected stop codon in the beginning of your sequence, query STOP codon too far from subject stop. Distance to subject end: 51 aas, putative chimeric sequence, your sequence is shorter than subject: 216 - 776

Fln protein: PGLCHDR*AR*SDGHHIADHIVRVHQKHEEALSPSFTTAQIQRYIAYAKTLKPKLGTEARKVLVDAYVSLRRGDAAPGSRVAYRITVRQLEALIRLSEAIARVHLDSEVRPAHVHMAGRLISTSIISVDSNEIDLADFEDAENNNNDRGAGYNENQPAEAEGYQPSGNGTIAAEGKAGDQPKKKMTVTYEHFQKLLVPLSCGLDNMKNHLKMRLV*

Protein Length: 217

Fln nts: CCTGGTTTATGTCATGATAGATGAGCCAGATGATCAGACGGACACCATATTGCAGATCATATTGTTAGAGTTCACCAAAAGCATGAAGAGGCACTGTCTCCATCTTTTACTACTGCTCAAATTCAGCGATACATTGCTTATGCAAAGACCCTTAAGCCAAAGCTAGGTACTGAAGCCAGAAAGGTCCTAGTTGATGCTTATGTATCCTTGCGGCGAGGTGATGCTGCACCTGGTAGTCGAGTTGCATACAGAATTACAGTGAGGCAATTGGAAGCTTTGATAAGATTGTCTGAGGCCATTGCTCGAGTGCACTTGGATTCTGAGGTGCGGCCAGCCCATGTTCATATGGCAGGGAGACTAATTAGCACATCCATTATCAGTGTTGACTCAAATGAGATTGATCTGGCTGATTTCGAAGATGCGGAGAATAACAATAATGATAGAGGTGCTGGGTACAATGAGAACCAACCAGCAGAAGCAGAAGGCTATCAACCTTCAGGCAATGGTACAATAGCAGCAGAAGGAAAAGCTGGTGATCAACCAAAGAAGAAAATGACAGTTACATATGAGCATTTCCAAAAGTTACTCGTGCCCTTGTCATGCGGCTTAGACAACATGAAGAATCACTTAAAGATGAGACTGGTTTAG___CTGGTTTGAAACAGGCAGATCTAATCAAGTGGTACGTCGAAGATTTGAACTCCCAGCAGGTTTTTGATACAATGAGTGGATTACTGGAAGAAGTAAAAATTGTGAGGTCGATCATACAGCATTTGATAGACAGGGAAGGTGTTCTTGTGGTTCTTGATGACAGCCCACAAGCACCAGCACCTGGGACAGAAGGATTAGCCCAGTCCACTAGGAATGATCAGAGGGTTTTAGCAGTTAATCCCAACTATGTCTTAGAGTAGGAACTTTATATGAAACATGGTAAAATTTCTATGGAATTAACCCATATTAAGCATAGGCCATTATGATCTAATGCAGTTTAATTATATTCTGCATTTCTGGTTGCCAGTGAAAAGGAGCAGTTGACATATGGAAACGAGTCTGTATTTCTATATCAAACCCAGCTGATGATATTAAGTAGTTCAGATAAGTCTGTATTGCACAGGAGTTG

Fln Alignment:

Contig6189___QKHEEALSPSFTTAQIQRYIAYAK-TLKPKLGTEARKVLVDAYVSLRRGDAAPGSRVAYRITVRQLEALIRLSEAIARVHLDSEVRPAHVHMAGRLISTSIISVDSNEI
Q9FL33_________________QTHDKTLTIKF----LKKYIHYAKHRITPKLTDEASERIAEAYADLRNAGSDTKTGGTLPITARTLETIIRLATAHAKMKLSSEVTKADAEAALKLMNFAIYHQELTEM

SNPs (tot: 31)

Position	A %	C %	G %	T %	Probability
233	80		20		0.995493
264	10		90		0.90298
321	90		10		0.90298
359	11		88		0.923564
390	87		12		0.992554
407	66		16		0.988813
433		83	16		0.994512
434	16		83		0.994512
451	16		83		0.994512
457		83		16	0.994512
461		16		83	0.994512
462		16		83	0.994512
466	83			16	0.994512
483		20		80	0.995493
506		20		80	0.995493
509		20		80	0.995493
511		20		80	0.995493
513	80			20	0.995493
576		25		75	0.996473
577		25		75	0.996473
578		25		75	0.996473
579	25		75		0.996473
580			75	25	0.996473
609	33		66		0.997452
634	33		66		0.997452
643		66		33	0.997452
667	33	66			1.0
913		57		42	1.0
1044		20		80	0.995493
1045		20		60	0.99255
1046	20			80	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain