SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene6175

Length: 1097 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog2_v2.0_unigene6175 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene13765	19/21
SustainPine v2.0	sp_v2.0_unigene61843	2/21

Source	Descriptions	Term	Type	e value	Identity
AutoFact	pfam01612, DNA_pol_A_exo1, 3'-5' exonuclease	-	-	1.0e-17	28%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	72%
Blast2go	werner syndrome-like exonuclease-like	-	-	0.0	62%

Source	GOs	Term	Type	Identity
Blast2go	nucleobase-containing compound metabolic process	GO:0006139	Biological Process	62%
Blast2go	nucleic acid binding	GO:0003676	Molecular Function	62%
Blast2go	3'-5' exonuclease activity	GO:0008408	Molecular Function	62%
Blast2go	intracellular	GO:0005622	Cellular Component	62%

Source	InterPros	Term	Type	e value	Identity
Sma3	3'-5' exonuclease domain	IPR002562	-	0.0	-

Full-Lengther Next Prediction

SNPs (tot: 8)

Position	A %	C %	G %	T %	Probability
276		16		83	0.994512
403		85	14		0.993533
739	25	75			0.996473
924		33	66		0.997452
1002			25	75	0.996473
1022	75		25		0.996473
1090	66	33			0.997452
1091		33	66		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain