SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene6167

Length: 1019 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog2_v2.0_unigene6167 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene24036	70/78
SustainPine v2.0	sp_v2.0_unigene61402	8/78

Source	Descriptions	Term	Type	Identity
AutoFact	Ubiquitin-conjugating enzyme E2 35 n=42 Tax=Embryophyta RepID=UBC35_ARATH	-	-	97%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	98%
Blast2go	ubiquitin-conjugating enzyme 1	-	-	98%

Source	ECs	Term	Type	e value	Identity
Blast2go	Ubiquitin--protein ligase.	EC:6.3.2.19	-	0.0	98%

Source	GOs	Term	Type	Identity
Blast2go	postreplication repair	GO:0006301	Biological Process	98%
Blast2go	ubiquitin-dependent protein catabolic process	GO:0006511	Biological Process	98%
Blast2go	root epidermal cell differentiation	GO:0010053	Biological Process	98%
Blast2go	response to iron ion	GO:0010039	Biological Process	98%
Blast2go	protein ubiquitination	GO:0016567	Biological Process	98%
Blast2go	response to cadmium ion	GO:0046686	Biological Process	98%
Blast2go	ubiquitin-protein ligase activity	GO:0004842	Molecular Function	98%
Blast2go	protein binding	GO:0005515	Molecular Function	98%
Blast2go	UBC13-MMS2 complex	GO:0031372	Cellular Component	98%
Blast2go	plasma membrane	GO:0005886	Cellular Component	98%

Source	InterPros	Term	Type	e value	Identity
Sma3	Ubiquitin-conjugating enzyme/RWD-like	IPR016135	-	0.0	-
Sma3	Ubiquitin-conjugating enzyme, E2	IPR000608	-	0.0	-

Full-Lengther Next Prediction

SNPs (tot: 13)

Position	A %	C %	G %	T %	Probability
257	87	12			0.992554
966	88	11			0.923564
967		11		88	0.923564
968	77	11			0.968132
969		22	77		0.999999
970	88	11			0.923564
971		11	77	11	0.968132
973	12			75	0.975346
976	71	28			1.0
977	71	28			1.0
980			71	28	1.0
992	80	20			0.995493
993	80	20			0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain