SustainPineDB

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene6163

Length: 1226 nt

UniGene Fasta

Ace file of the UniGene biog2_v2.0_unigene6163

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene25139	33/33

Source	Descriptions	Term	Type	Identity
AutoFact	Tubulin beta-4 chain n=11 Tax=Eukaryota RepID=TBB4_ORYSJ	-	-	94%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	100%
Blast2go	beta-tubulin 2	-	-	99%

Source	GOs	Term	Type	e value	Identity
Blast2go	cellular process	GO:0009987	Biological Process	0.0	99%
Blast2go	intracellular part	GO:0044424	Cellular Component	0.0	99%

Source	InterPros	Term	Type	Identity
Sma3	Beta tubulin	IPR002453	-	-
Sma3	Peptidase S26A, signal peptidase I, serine active site	IPR019756	-	-
Sma3	Tubulin	IPR000217	-	-
Sma3	Tubulin/FtsZ, 2-layer sandwich domain	IPR018316	-	-
Sma3	Tubulin, conserved site	IPR017975	-	-
Sma3	Tubulin/FtsZ, GTPase domain	IPR003008	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: D5ABQ9

Fln msg: Distance to subject end: 88 aas, your sequence is shorter than subject: 357 - 445

Fln protein: MREILHIQGGQCGNQIGAKFWEVVCDEHGIDPTGRYQGTSDLQLERVNVYYNEASCGRFVPRAVLMDLEPGTMDSVRTGPYGQVFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDSKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMMNVQNKNSSYFVEWIPNNVKSSACDIP

Protein Length: 358

Fln nts: ATGGGGAAGGCAGAGAGGGACGCAGAGCTTTCTCCATTGCCCTGTTCTGTCTCTTCTTTTTGTGTTGGTTTTCTGCGAGTCCACTGTTTTTCAGTTGAGGTTTTATCCTTCCGAGCGTTCTGTCTTTCGGTGTTGCAAGTTTTAATTTGCAAAG_-_ATGCGTGAAATCCTGCACATTCAGGGCGGCCAATGCGGCAACCAGATCGGTGCCAAGTTCTGGGAAGTTGTCTGTGATGAGCACGGAATCGATCCCACCGGGAGATACCAGGGCACTTCAGATCTACAGCTCGAAAGGGTTAATGTTTACTACAATGAGGCGAGCTGTGGGAGATTTGTGCCCCGTGCTGTGCTAATGGATCTGGAGCCTGGGACCATGGACAGCGTGAGGACCGGGCCTTATGGCCAGGTCTTCAGGCCCGATAACTTCGTTTTTGGCCAGTCTGGGGCTGGAAATAACTGGGCCAAGGGCCATTATACCGAAGGGGCCGAGCTCATCGATTCAGTGCTGGATGTCGTTAGGAAGGAGGCCGAAAACTGTGATTGCCTTCAAGGGTTTCAAGTGTGCCATTCTTTGGGAGGAGGTACTGGATCTGGGATGGGAACCCTTTTGATCTCCAAGATCAGGGAGGAGTACCCTGATCGAATGATGCTTACCTTCTCTGTTTTCCCTTCTCCCAAGGTGTCTGACACAGTGGTGGAGCCTTATAATGCCACACTCTCTGTGCATCAGCTGGTGGAGAACGCAGATGAGTGTATGGTACTGGACAATGAGGCCCTTTACGACATCTGCTTCAGGACTCTGAAGCTCACAACTCCTAGCTTTGGCGATTTGAACCATCTGATATCTGCAACAATGAGTGGAGTCACCTGCTGCCTGAGGTTCCCTGGTCAGCTGAACTCAGATCTAAGGAAACTGGCAGTGAATTTGATCCCCTTCCCCCGTCTTCATTTCTTTATGGTGGGATTTGCCCCGTTGACTTCACGTGGTTCACAACAATACAGAGCCCTCACCGTCCCAGAACTGACACAACAGATGTGGGATTCCAAGAACATGATGTGTGCTGCAGATCCACGTCACGGCAGGTATCTGACTGCATCTGCCATGTTCAGAGGCAAGATGAGCACCAAGGAGGTGGATGAACAGATGATGAATGTTCAGAACAAGAATTCCTCCTACTTTGTGGAATGGATCCCCAACAATGTGAAATCCAGTGCATGTGATATCCCGC

Fln Alignment:

Contig6163___MREILHIQGGQCGNQIGAKFWEVVCDEHGIDPTGRYQGTSDLQLERVNVYYNEASCGRFVPRAVLMDLEPGTMDSVRTGPYGQVFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDSKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMMNVQNKNSSYFVEWIPNNVKSSACDIP
D5ABQ9_________________MREILHIQGGQCGNQIGAKFWEVVCDEHGIDPTGRYQGTSDLQLERVNVYYNEASCGRFVPRAVLMDLEPGTMDSVRTGPYGQVFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDSKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMMNVQNKNSSYFVEWIPNNVKSSACDIP

SNPs (tot: 8)

Position	A %	C %	G %	T %	Probability
929		66	33		0.997452
930		66	33		0.997452
931		66	33		0.997452
937		66		33	0.997452
1013		88		11	0.923564
1101	85		14		0.999981
1161	87		12		0.992554
1172		85		14	0.993533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain