SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene6157

Length: 759 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog2_v2.0_unigene6157 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene25523	7/35
SustainPine v2.0	sp_v2.0_unigene40753	27/35
SustainPine v2.0	sp_v2.0_unigene81056	1/35

Source	Descriptions	Term	Type	e value	Identity
AutoFact	heat shock protein 21 [Arabidopsis thaliana] sp\|P31170.1\|HS25P_ARATH RecName: Full=25.3 kDa heat shock protein, chloroplastic; Short=AtHsp25.3; Flags: Precursor emb\|CAA38036.1\| heat shock protein [Arabidopsis thaliana] gb\|AAA32818.1\| heat shock protein 21	-	-	5.04467e-44	47%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	78%
Blast2go	heat shock protein 21	-	-	0.0	66%

Source	GOs	Term	Type	Identity
Blast2go	response to high light intensity	GO:0009644	Biological Process	66%
Blast2go	response to hydrogen peroxide	GO:0042542	Biological Process	66%
Blast2go	response to heat	GO:0009408	Biological Process	66%

Full-Lengther Next Prediction

SNPs (tot: 11)

Position	A %	C %	G %	T %	Probability
489		12		87	0.992554
627	66			16	0.988813
628	33			66	1.0
629		16		83	0.994512
696	10			90	0.90298
697	10		90		0.90298
698		10		90	0.90298
749	77	22			0.999999
750	77	22			0.999999
751		22		77	0.999999
752	22			77	0.999999

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain