SustainPineDB

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene6147

Length: 1462 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog2_v2.0_unigene6147 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene23744	12/63
SustainPine v2.0	sp_v2.0_unigene24001	6/63
SustainPine v2.0	sp_v2.0_unigene31060	44/63

Source	Descriptions	Term	Type	Identity
AutoFact	Anthocyanidin synthase n=1 Tax=Ginkgo biloba RepID=B2M0X8_GINBI	-	-	78%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	93%
Blast2go	anthocyanidin synthase	-	-	83%

Source	InterPros	Term	Type	e value	Identity
Sma3	Oxoglutarate/iron-dependent oxygenase	IPR005123	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NVW2

Fln msg:

Fln protein: MAPARVESLALSGLAAIPAEYVRPVEERPTECVLNLKGGNEAEGPQIPVVDVAGWDSADEEIKKEIGRQVAEASRSWGVMQLLNHGISEILIERLQAAGKAFFDLPVEEKEKYANDHAAGKIAGYGSKLANNVSGQLEWEDYYFHLLWPEQRRDMTTWPKHPQEYIEVTDAYGRQIRKLVTKILATLSLDLGVEEDRMERVLGGENLEMQLKINYYPRCPQPELALGVEAHTDISALTFLLHNMVPGLQLFKDGKWVTAKCIPGALIVHIGDQVEILSNGKFKSGLHRGLVNKEKVRISWAVFCDPPKDAVIGPMKEMVDENNPPLFPAKTFQQHTDHKLFKKAQAQAEAQATKKLAQST*

Protein Length: 362

Fln nts: ATGGGGACACCACATTGCTATTTATTGCTCTCTTCGTTCTAAAAGGATTGCTGAATTCTAGTTTCTAGTTATC_-_ATGGCACCAGCACGAGTGGAGAGCCTGGCATTGAGCGGCCTGGCCGCTATTCCTGCCGAGTACGTGAGACCAGTGGAGGAGAGGCCTACTGAGTGCGTTCTCAACTTGAAAGGAGGAAACGAAGCCGAAGGTCCGCAGATTCCGGTGGTAGACGTTGCCGGATGGGATTCTGCCGACGAGGAGATCAAGAAGGAGATCGGGCGTCAGGTGGCGGAGGCGAGCAGATCGTGGGGAGTGATGCAGCTGCTGAACCACGGCATATCTGAGATTCTGATAGAGCGGCTTCAGGCAGCCGGGAAGGCGTTCTTCGATCTCCCTGTTGAAGAGAAAGAGAAGTACGCGAATGACCACGCAGCGGGGAAGATAGCGGGGTACGGCTCCAAGCTCGCCAACAACGTCAGCGGTCAGCTTGAATGGGAAGATTACTATTTCCACCTGCTATGGCCTGAACAGCGCAGAGACATGACCACCTGGCCGAAGCACCCCCAAGAATACATCGAGGTGACAGACGCTTACGGTCGGCAGATACGGAAGCTTGTGACCAAAATCTTGGCCACGCTTTCGTTGGATCTGGGCGTGGAGGAAGACAGAATGGAGCGCGTGCTCGGCGGCGAAAATCTCGAAATGCAACTGAAAATAAATTACTATCCACGCTGTCCACAACCGGAGCTCGCTCTCGGAGTGGAGGCACACACCGACATCAGCGCACTCACATTTCTTCTGCATAACATGGTGCCCGGCCTTCAGCTCTTCAAAGACGGCAAATGGGTTACCGCCAAATGCATTCCGGGCGCCCTCATCGTCCACATTGGCGACCAAGTAGAGATTTTGAGCAACGGGAAATTCAAGAGCGGGCTGCACAGAGGACTGGTCAACAAAGAGAAGGTGAGGATTTCTTGGGCTGTGTTCTGTGATCCGCCAAAGGATGCGGTGATCGGACCCATGAAGGAGATGGTGGACGAGAACAATCCTCCGTTGTTTCCGGCGAAGACCTTCCAACAGCACACCGATCATAAGCTGTTCAAGAAGGCCCAAGCCCAGGCGGAGGCCCAAGCCACCAAAAAACTCGCCCAGTCTACCTGA___GGTTGTACGGTCTACGATGCGATGGTTCTTAGAACGAGTATATGGTACTGTTGTGGGTGTGTTACCGCAGTGTGACTGACTTTACTTGTTATGATTAGTGACTCGCCAGGTTGTTCGATACGCTGTCCATTAGGTGGTCAGCGGATATCACTGTAATAGTGCCTCAGTGACAGGTAAATTATTAGCGGATATGTCCGTATGGCCTCTCTCTGTTAATTCACAGAAAATTTCTAAAATAACTGGGATAGCCTGCAGTGGGAAAGGCAGGATGGAAAGTTTATATATCTGTATAAAGAGGCTTGTTTT

Fln Alignment:

Contig6147___MAPARVESLALSGLAAIPAEYVRPVEERPTECVLNLKGGNEAEGPQIPVVDVAGWDSADEEIKKEIGRQVAEASRSWGVMQLLNHGISEILIERLQAAGKAFFDLPVEEKEKYANDHAAGKIAGYGSKLANNVSGQLEWEDYYFHLLWPEQRRDMTTWPKHPQEYIEVTDAYGRQIRKLVTKILATLSLDLGVEEDRMERVLGGENLEMQLKINYYPRCPQPELALGVEAHTDISALTFLLHNMVPGLQLFKDGKWVTAKCIPGALIVHIGDQVEILSNGKFKSGLHRGLVNKEKVRISWAVFCDPPKDAVIGPMKEMVDENNPPLFPAKTFQQHTDHKLF
A9NVW2_________________MAPARVESLALSGLAAIPPEYVRPVEERPTECVLKVKGV-EDEGPQIPVVDIAGWDSADEEIKKEIGRQVAKASREWGVMQLLNHGISEILIERLQAAGKAFFDLPVEEKEKYANDHAAGKIAGYGSKLANNASGQLEWEDYYFHLLWPEQRRDMTTWPKHPQEYIEVTDAYGREIRKLVTKILATLSSDLGVEEERLERVLGGENLEMQLKINYYPRCPQPELALGVEAHTDISALTFLLHNMVPGLQLFYEGKWVTAKCIPGALIVHIGDQVEILSNGKFTSGLHRGLVNKEKVRISWAVFCDPPKDALIGPMKEVVDESNPPLFPAKTFKEHTDHKLF

SNPs (tot: 16)

Position	A %	C %	G %	T %	Probability
542		11		88	0.923564
589	87	12			0.992554
591		12	87		0.992554
639	25		75		0.996473
862		80		20	0.995493
926		12		87	0.992554
1062		14		85	0.993533
1191	11	88			0.923564
1248		87		12	0.992554
1260	83	16			0.994512
1266	16		83		0.994512
1452		16	16		0.988813
1453		16	66	16	0.988813
1454		16	16	66	0.988813
1455		16	83		0.994512
1456	16		83		0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain