SustainPineDB

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene6118

Length: 1030 nt

UniGene Fasta

Ace file of the UniGene biog2_v2.0_unigene6118

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene16235	7/11
SustainPine v2.0	sp_v2.0_unigene81760	3/11

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Caffeoyl-CoA 3-O-methyltransferase n=3 Tax=Oryza sativa RepID=Q9XGP7_ORYSJ	-	-	4.00001e-40	47%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	80%
Blast2go	caffeoyl- o-methyltransferase 1	-	-	0.0	66%

Source	InterPros	Term	Type	Identity
Sma3	Integrase, catalytic core	IPR001584	-	-
Sma3	Calcium-binding EF-hand	IPR002048	-	-
Sma3	O-methyltransferase, family 3	IPR002935	-	-
Sma3	Domain of unknown function DUF292, eukaryotic	IPR005061	-	-
Sma3	EF-hand-like domain	IPR011992	-	-
Sma3	Reverse transcriptase, RNA-dependent DNA polymerase	IPR013103	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-
Sma3	EF-hand	IPR018248	-	-
Sma3	EF-HAND 2	IPR018249	-	-

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: A9NT68

Fln msg: Separated hits, possible frame ERROR between 312 and 441, STOP codon was not found. Distance to subject end: 15 aas, your sequence is longer than subject: 343 - 281

Fln protein: MGHRLLSSRSSQALLISLVNDTMGSHAENGNGVEVVDPTDLTDIENGKPGYDKRTLPADWKFGVKLQNVMEESIYKYMLETFTRHREDEASKELWERTWNLTQxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxRGEMMTLPDQVQFLRLMVKMSGAKKALEIGVFTGYSLLNIALALPSDGKVVAVDPGDDPKFGWPCFIKAGVADKVEIKKTTGLVFGFPYSKGGEGLLRLCIRGRRQSELRELSSRGCHNLRRHPLVWSGGRKGSPQPAEE*LHEDFSRGYQGHQLHGSQRPQLGGGHSLYGIWCHCLLPHCLVRFKLVLRHSAMYV

Protein Length: 344

Fln nts: _-_ATGGGGCACCGGCTTCTGAGCTCTCGATCCTCGCAGGCCCTTTTAATTTCCCTGGTGAACGATACGATGGGCTCGCACGCTGAGAATGGCAACGGGGTGGAGGTTGTTGATCCAACGGACTTAACTGACATCGAGAATGGGAAACCAGGTTATGACAAGCGTACGCTGCCTGCGGACTGGAAGTTTGGAGTGAAGCTTCAAAACGTTATGGAAGAATCCATTTACAAGTACATGCTGGAAACATTCACCCGCCATCGGGAGGACGAGGCGTCCAAGGAGCTCTGGGAACGGACATGGAACCTGACACAGAGxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxCAGAGGGGAGATGATGACATTGCCAGATCAGGTGCAGTTCCTGCGCTTGATGGTAAAGATGTCAGGTGCTAAAAAGGCATTGGAGATCGGAGTTTTCACTGGCTATTCATTGCTCAATATCGCTCTCGCTCTTCCTTCTGATGGCAAGGTGGTAGCTGTTGATCCAGGAGATGACCCCAAATTTGGCTGGCCCTGCTTCATTAAGGCTGGAGTTGCAGACAAGGTGGAGATCAAGAAAACCACAGGGTTGGTATTTGGATTCCCTTATTCAAAAGGGGGAGAAGGATTGCTTCGACTTTGCATTCGTGGACGCCGACAAAGTGAACTACGTGAACTATCATCCAGGGGGTGTCATAATTTACGACGACACCCTCTGGTTTGGTCTGGTGGGAGGAAAGGATCCCCACAACCTGCTGAAGAATGATTACATGAGGACTTCTCTAGAGGGTATCAAGGCCATCAACTCCATGGTAGCCAACGACCCCAACTTGGAGGTGGCCACAGTCTTTATGGGATATGGTGTCACTGTTTGTTACCGCACTGCTTAGTTAGGTTCAAACTAGTCCTCCGTCATTCTGCTATGTATGTATA

Fln Alignment:

Contig6118___MGSHAENGNGVEVV----------DPTDLTDIENGKPGYDKRTLPADWKFGVKLQNVMEESIYKYMLETFTRHREDEASKELWERTWNLTQRxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxRGEMMTLPDQVQFLRLMVKMSGAKKALEIGVFTGYSLLNIALALPSDGKVVAVDPGDDPKFGWPCFIKAGVADKVEIKKTTGLVF
A9NT68_________________MGSHAENGNGVKVVKVSETEEEVFEPSDLTEIENGKPGYDNRTLPPDWKFGVKLQNVMEESIYKYMLETFTRHREHEASKELWERTWKLTQRxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxRGEMMKLPDQVQFLRLMVKMSGAKKALEIGVFTGYSLLNIALALPSDGKVVAVDPGEDPKFGWPCFVKAGVADKVEIKQTTGLEY

SNPs (tot: 4)

Position	A %	C %	G %	T %	Probability
126	66		33		0.997452
188		25		75	0.996473
308	88		11		0.923564
378	40		60		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain