SustainPineDB

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene6109

Length: 2523 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog2_v2.0_unigene6109
ATGGGGACTCTCCTTCGATCGTTTGAAGGAAGATCAGGAATCTATCCGACTACTTACGGAAACTCTGCTGCTTTAGCTCTCTGGTTTGCAGCACTTTTTCTTCGAAGGGAAGTTAGGACTTTTCAAGCCCGAAAGCAATGGCTTCCCACGTTGTTGGATACCCTCGCATGGGTCCGAAGAGAGAGCTCAAGTTTGCTTTGGAGTCCTTCTGGGATGGCAAAACATCTGCTGCGGCTCTCGAGGTTGTGGCTAAGGAACTGAGGTCTTCGATCTGGAAGCAGATGGTAGCTGCCGGAGTCAAATTGATTCCCAGCAACACTTTCTCGTACTACGATCAAGTTCTGGACACCACTGCCATGCTTGGAGCTGTTCCTCCTAGGTATGGCTTCGCTGGCGGTGAGATTGGATTCGACACTTACTTTTCCATGGCCCGAGGAAACGCCACACTCCCTGCAATGGAGATGACCAAGTGGTTTGACACCAACTATCACTACATCGTTCCAGAGTTGGGCCCGGAGATCAAATTTGCTTACTCATCACACAAGGCAGTAGCAGAATACAAGGAGGCTAAAGAGCTGGGCATTGATACTGTGCCCGTGATTGTAGGACCCGTGTCATACTTGCTATTGTCTAAGCCCGCAAAAGGCGTGGCAAAGACCTTCAATCTTCTTACTCTTCTTGATTCAATCCTTCCAATTTACAAGCAAGTTGTGTCTGAGTTGGAGGCAGCTGGTGCAACATGGGTTCAGTTCGATGAACCATCTCTTGTAATGGATCTTGAGGCTCATCAGTTGGAAGCCTTTTCGAAGGCATATTCTTACTTGGAAGCATCATCTCTTGGTGTTAATCTGCTTGTAGAAACTTACTTTGCTGATATCCCTGTTGAGACTTACAAGGCCATTACTGGCTTGAAGGGTATCTCTGCTATTGGGTTTGATCTTATCCGTGGAACAAAGACTCTCGAACTCATCAAGGAGATTGGTTTCCCTGCTGACAAAATCTTGTTTGCAGGAGTAGTTGACGGCCGAAATATTTGGGCCAATGATCTGGCTGCTTCATTGACCGTTTTGGAAAGCCTTGAGAGCATAGTTGGGAAAGATAAACTAGTTGTCTCTACTTCCTGCTCCCTCTTGCACACGGCTGTGGATTTGGAAAATGAAACAAAGCTTGACAGTGAAATTAAGTCTTGGTTAGCTTTTGCTGCACAAAAGCTTATTGAAGTGGATGCCTTAGCCAAGGCATTGGCTGGTCAGAAAGATGAGGCATTCTTTGCGGCCAACGCATCTGCACTGGCTTCAAGGAGGACGTCTCCAAGAGTGACAAACGAGGCAGTTCAAAAAGCTGCTGCAGCGTTGAAGACTTCTGACCATCGACGAGCTACGCCAGTAAACATTCGTCTTGAGCAACAACAGAAAAAGTTGAATCTTCCAATTCTTCCCACGACAACAATTGGGTCATTCCCACAGACAGTTGAATTGCGTAGGGTTCGTCGTGAATTCAAGATAAACAAGATTTCAGAGGAAGAATATGTTAGCTCCATCAAGGAAGAAATTGCCAAGGTTGTCAAATTGCAAGAGGACCTTGATATTGATGTGCTTGTGCACGGAGAACCCGAGAGGAATGACATGGTGGAGTACTTTGGAGAACAGCTTCAGGGCTTTGCATTTACAGTCAATGGTTGGGTACAGTCTTATGGATCCCGTTGTGTGAAGCCACCAGTTATCTATGGTGATGTCAGTCGCCCAAAGGCTATGACTGTCTTTTGGTCCAAGATGGCTCAGAGCATGACTGCTCGACCCATGAAGGGAATGCTCACTGGCCCAGTGACAATTTTGAACTGGTCCTTTGTTAGAAATGATCAACCAAGATCTGAAACTTGCATGCAAATTGCCTTGGCCATCAAGGATGAGGTGGAAGACTTGGAAGCGGGTGGAATTCAGGTTATTCAAATTGACGAGGCTGCTCTTAGAGAAGGATTGCCTCTACGCAAGGCTGAACATGCTTATTACCTGGATTGGGCTGTACACGGATTCCGCATCACTAACTGTGGTGTGCAAGATACAACTCAGATCCATACCCACATGTGCTACTCTAACTTCAACGATATTATTCATTCAATCATTGATATGGATGCCGATGTAATCACCATTGAGAATTCTCGTTCCGATGAGAAACTTCTCTCAGTTTTCCGAGAGGGTGTGAAATATGGTGCCGGAATTGGCCCTGGTGTCTATGACATTCACTCTCCTCGCATTCCAAGCGTAGAAGAAATTGCAGATCGTATCAGCAAGATGCTTGCTGTGCTCGAAACAAGCATTTTATGGGTTAATCCTGACTGTGGTCTGAAGACCAGGAAGTACACCGAGGTCATTCCTGCTCTGACCAACGTGGTTGCAGCTGCCAAATTGCTGCGAGCTCAGTTGGCCAGTGCAAAGTGAAGCGATCCCAGCTATTTTCCCAAATTCAGTTTTAAGCCATCCCAGCTATCTTCCAAATTCAATTTACAAGTACCATGAGTGTTGG

Ace file of the UniGene biog2_v2.0_unigene6109 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene15434	5/9
SustainPine v2.0	sp_v2.0_unigene24577	1/9
SustainPine v2.0	sp_v2.0_unigene25434	2/9
SustainPine v2.0	sp_v2.0_unigene82618	1/9

Source	Descriptions	Term	Type	Identity
AutoFact	5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase n=5 Tax=core eudicotyledons RepID=METE_CATRO	-	-	80%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	95%
Blast2go	5-methyltetrahydropteroyltriglutamate-homocysteine expressed	-	-	92%

Source	InterPros	Term	Type	Identity
Sma3	Cobalamin (vitamin B12)-independent methionine synthase MetE, N-terminal	IPR013215	-	-
Sma3	Methionine synthase, vitamin-B12 independent	IPR002629	-	-
Sma3	Cobalamin-independent methionine synthase	IPR006276	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LPY2

Fln msg:

Fln protein: MASHVVGYPRMGPKRELKFALESFWDGKTSAAALEVVAKELRSSIWKQMVAAGVKLIPSNTFSYYDQVLDTTAMLGAVPPRYGFAGGEIGFDTYFSMARGNATLPAMEMTKWFDTNYHYIVPELGPEIKFAYSSHKAVAEYKEAKELGIDTVPVIVGPVSYLLLSKPAKGVAKTFNLLTLLDSILPIYKQVVSELEAAGATWVQFDEPSLVMDLEAHQLEAFSKAYSYLEASSLGVNLLVETYFADIPVETYKAITGLKGISAIGFDLIRGTKTLELIKEIGFPADKILFAGVVDGRNIWANDLAASLTVLESLESIVGKDKLVVSTSCSLLHTAVDLENETKLDSEIKSWLAFAAQKLIEVDALAKALAGQKDEAFFAANASALASRRTSPRVTNEAVQKAAAALKTSDHRRATPVNIRLEQQQKKLNLPILPTTTIGSFPQTVELRRVRREFKINKISEEEYVSSIKEEIAKVVKLQEDLDIDVLVHGEPERNDMVEYFGEQLQGFAFTVNGWVQSYGSRCVKPPVIYGDVSRPKAMTVFWSKMAQSMTARPMKGMLTGPVTILNWSFVRNDQPRSETCMQIALAIKDEVEDLEAGGIQVIQIDEAALREGLPLRKAEHAYYLDWAVHGFRITNCGVQDTTQIHTHMCYSNFNDIIHSIIDMDADVITIENSRSDEKLLSVFREGVKYGAGIGPGVYDIHSPRIPSVEEIADRISKMLAVLETSILWVNPDCGLKTRKYTEVIPALTNVVAAAKLLRAQLASAK*

Protein Length: 768

Fln nts: ATGGGGACTCTCCTTCGATCGTTTGAAGGAAGATCAGGAATCTATCCGACTACTTACGGAAACTCTGCTGCTTTAGCTCTCTGGTTTGCAGCACTTTTTCTTCGAAGGGAAGTTAGGACTTTTCAAGCCCGAAAGCA_-_ATGGCTTCCCACGTTGTTGGATACCCTCGCATGGGTCCGAAGAGAGAGCTCAAGTTTGCTTTGGAGTCCTTCTGGGATGGCAAAACATCTGCTGCGGCTCTCGAGGTTGTGGCTAAGGAACTGAGGTCTTCGATCTGGAAGCAGATGGTAGCTGCCGGAGTCAAATTGATTCCCAGCAACACTTTCTCGTACTACGATCAAGTTCTGGACACCACTGCCATGCTTGGAGCTGTTCCTCCTAGGTATGGCTTCGCTGGCGGTGAGATTGGATTCGACACTTACTTTTCCATGGCCCGAGGAAACGCCACACTCCCTGCAATGGAGATGACCAAGTGGTTTGACACCAACTATCACTACATCGTTCCAGAGTTGGGCCCGGAGATCAAATTTGCTTACTCATCACACAAGGCAGTAGCAGAATACAAGGAGGCTAAAGAGCTGGGCATTGATACTGTGCCCGTGATTGTAGGACCCGTGTCATACTTGCTATTGTCTAAGCCCGCAAAAGGCGTGGCAAAGACCTTCAATCTTCTTACTCTTCTTGATTCAATCCTTCCAATTTACAAGCAAGTTGTGTCTGAGTTGGAGGCAGCTGGTGCAACATGGGTTCAGTTCGATGAACCATCTCTTGTAATGGATCTTGAGGCTCATCAGTTGGAAGCCTTTTCGAAGGCATATTCTTACTTGGAAGCATCATCTCTTGGTGTTAATCTGCTTGTAGAAACTTACTTTGCTGATATCCCTGTTGAGACTTACAAGGCCATTACTGGCTTGAAGGGTATCTCTGCTATTGGGTTTGATCTTATCCGTGGAACAAAGACTCTCGAACTCATCAAGGAGATTGGTTTCCCTGCTGACAAAATCTTGTTTGCAGGAGTAGTTGACGGCCGAAATATTTGGGCCAATGATCTGGCTGCTTCATTGACCGTTTTGGAAAGCCTTGAGAGCATAGTTGGGAAAGATAAACTAGTTGTCTCTACTTCCTGCTCCCTCTTGCACACGGCTGTGGATTTGGAAAATGAAACAAAGCTTGACAGTGAAATTAAGTCTTGGTTAGCTTTTGCTGCACAAAAGCTTATTGAAGTGGATGCCTTAGCCAAGGCATTGGCTGGTCAGAAAGATGAGGCATTCTTTGCGGCCAACGCATCTGCACTGGCTTCAAGGAGGACGTCTCCAAGAGTGACAAACGAGGCAGTTCAAAAAGCTGCTGCAGCGTTGAAGACTTCTGACCATCGACGAGCTACGCCAGTAAACATTCGTCTTGAGCAACAACAGAAAAAGTTGAATCTTCCAATTCTTCCCACGACAACAATTGGGTCATTCCCACAGACAGTTGAATTGCGTAGGGTTCGTCGTGAATTCAAGATAAACAAGATTTCAGAGGAAGAATATGTTAGCTCCATCAAGGAAGAAATTGCCAAGGTTGTCAAATTGCAAGAGGACCTTGATATTGATGTGCTTGTGCACGGAGAACCCGAGAGGAATGACATGGTGGAGTACTTTGGAGAACAGCTTCAGGGCTTTGCATTTACAGTCAATGGTTGGGTACAGTCTTATGGATCCCGTTGTGTGAAGCCACCAGTTATCTATGGTGATGTCAGTCGCCCAAAGGCTATGACTGTCTTTTGGTCCAAGATGGCTCAGAGCATGACTGCTCGACCCATGAAGGGAATGCTCACTGGCCCAGTGACAATTTTGAACTGGTCCTTTGTTAGAAATGATCAACCAAGATCTGAAACTTGCATGCAAATTGCCTTGGCCATCAAGGATGAGGTGGAAGACTTGGAAGCGGGTGGAATTCAGGTTATTCAAATTGACGAGGCTGCTCTTAGAGAAGGATTGCCTCTACGCAAGGCTGAACATGCTTATTACCTGGATTGGGCTGTACACGGATTCCGCATCACTAACTGTGGTGTGCAAGATACAACTCAGATCCATACCCACATGTGCTACTCTAACTTCAACGATATTATTCATTCAATCATTGATATGGATGCCGATGTAATCACCATTGAGAATTCTCGTTCCGATGAGAAACTTCTCTCAGTTTTCCGAGAGGGTGTGAAATATGGTGCCGGAATTGGCCCTGGTGTCTATGACATTCACTCTCCTCGCATTCCAAGCGTAGAAGAAATTGCAGATCGTATCAGCAAGATGCTTGCTGTGCTCGAAACAAGCATTTTATGGGTTAATCCTGACTGTGGTCTGAAGACCAGGAAGTACACCGAGGTCATTCCTGCTCTGACCAACGTGGTTGCAGCTGCCAAATTGCTGCGAGCTCAGTTGGCCAGTGCAAAGTGA___AGCGATCCCAGCTATTTTCCCAAATTCAGTTTTAAGCCATCCCAGCTATCTTCCAAATTCAATTTACAAGTACCATGAGTGTTGG

Fln Alignment:

Contig6109___MASHVVGYPRMGPKRELKFALESFWDGKTSAAALEVVAKELRSSIWKQMVAAGVKLIPSNTFSYYDQVLDTTAMLGAVPPRYGFAGGEIGFDTYFSMARGNATLPAMEMTKWFDTNYHYIVPELGPEIKFAYSSHKAVAEYKEAKELGIDTVPVIVGPVSYLLLSKPAKGVAKTFNLLTLLDSILPIYKQVVSELEAAGATWVQFDEPSLVMDLEAHQLEAFSKAYSYLEASSLGVNLLVETYFADIPVETYKAITGLKGISAIGFDLIRGTKTLELIKEIGFPADKILFAGVVDGRNIWANDLAASLTVLESLESIVGKDKLVVSTSCSLLHTAVDLENETKLDSEIKSWLAFAAQKLIEVDALAKALAGQKDEXXXXXXXXXXXSRRTSPRVTNEAVQKAAAALKTSDHRRATPVNIRLEQQQKKLNLPILPTTTIGSFPQTVELRRVRREFKINKISEEEYVSSIKEEIAKVVKLQEDLDIDVLVHGEPERNDMVEYFGEQLQGFAFTVNGWVQSYGSRCVKPPVIYGDVSRPKAMTVFWSKMAQSMTARPMKGMLTGPVTILNWSFVRNDQPRSETCMQIALAIKDEVEDLEAGGIQVIQIDEAALREGLPLRKAEHAYYLDWAVHGFRITNCGVQDTTQIHTHMCYSNFNDIIHSIIDMDADVITIENSRSDEKLLSVFREGVKYGAGIGPGVYDIHSPRIPSVEEIADRISKMLAVLETSILWVNPDCGLKTRKYTEVIPALTNVVAAAKLLRAQLASAK
B8LPY2_________________MASHVVGYPRMGPKRELKFALESFWDGKSSAADLEAVAKGLRASIWKQMVAAGVKLIPSNTFSFYDQVLDTTAMLGAVPPRYSFAGGEIGFDTYFSMARGNATLPAMEMTKWFDTNYHYIVPELGPEIKFAYSSHKAVAEYKEAKELGIDTVPVIVGPVSYLLLSKPAKGVAKTFNLLSLLDAILPIYKQVVSELEAAGATFVQFDEPSLVMDLEAHQLEAFSKAYSYLDAASLGVNLLVETYFADIPVETYKTITGLKGISAIGFDFIRGSKTLGLIKEAGFPADKVLFAGVVDGRNIWANDLADSLSVLESLENIVGKDKLVVSTSCSLLHTAVDLVNETKLDSEIKSWLAFAAQKLIEVDALAKALAGQKDEAFFAANAAALASRRASPRVTNEAVQKAAAALKTSDHRRVTPVNVRLEQQQKKLNLPILPTTTIGSFPQTVELRRVRREYKINKISEDEYVSSIKEEIAKVVKLQEDLDIDVLVHGEPERNDMVEYFGEQLQGFAFTVNGWVQSYGSRCVKPPVIYGDVSRPKPMTVFWSKVAQSMTARPMKGMLTGPVTILNWSFVRNDQPRSETCMQIALAIKDEVEDLEAGGIQVIQIDEAALREGLPLRKAEHAYYLDWAVHGFRITNSGVQDTTQIHTHMCYSNFNDIIHSIIDMDADVITIENSRSDEKLLSVFREGVKYGAGIGPGVYDIHSPRIPSTEEIADRISKMLAVLETNILWVNPDCGLKTRKYPEVVPALTNMVAAAKLLRAQLASAK

SNPs (tot: 30)

Position	A %	C %	G %	T %	Probability
133		25		75	0.996473
143		25		75	0.996473
146	75		25		0.996473
149	25		75		0.996473
1219		33		66	1.0
1226		33		66	1.0
1233	33			66	0.997452
1244	33		66		1.0
1248	33		66		0.997452
1295	20		80		0.995493
1350		60		40	1.0
1379	40	60			1.0
1400	40		60		1.0
1421		40		60	1.0
1460	25		75		0.996473
1491	75		25		0.996473
2261	33	66			0.997452
2274	33		66		0.997452
2281	66		33		0.997452
2282		66		33	0.997452
2289	66		33		0.997452
2290			33	66	0.997452
2326		33	66		0.997452
2328	33		66		0.997452
2332	66		33		0.997452
2350		33	66		0.997452
2353	66		33		0.997452
2422		33		66	0.997452
2427	33		66		0.997452
2432	66		33		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain