SustainPineDB

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene6102

Length: 1068 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog2_v2.0_unigene6102 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene24435	3/8
SustainPine v2.0	sp_v2.0_unigene82177	3/8
SustainPine v2.0	sp_v2.0_unigene82740	2/8

Source	Descriptions	Term	Type	Identity
AutoFact	DEAD box RNA helicase [Pisum sativum] gb\|AAR97917.1\| DEAD box RNA helicase [Pisum sativum]	-	-	86%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	98%
Blast2go	protein	-	-	94%

Source	GOs	Term	Type	e value	Identity
Blast2go	binding	GO:0005488	Molecular Function	0.0	94%
Blast2go	hydrolase activity	GO:0016787	Molecular Function	0.0	94%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: C0PSP8

Fln msg: Distance to subject end: 89 aas, your sequence is shorter than subject: 322 - 411

Fln protein: MAAADQAGNNFDAKSYDKNMQSVLGGEELYSTWEEVHETFDSMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCQGLDVIQQAQSGTGKTATFCSGILQQLDYSMPECQALVLAPTRELAQQIEKVMRALGDYLQVRVHACVGGTSIREDLRILQAGVHVVVGTPGRVYDMLRRRALRPDSIKMFVLDEADEMLSRGFKDQIYDIFQLLPANLQVGVFSATMPPEALEITRKFMTNPVRILVKRDELTLEGIKQFYVNVEREDWKLDTLCDLYETLAITQSVIFINTRRKVDWLTDQMRARDHTVSATHGDMDQNTRDIIMRE

Protein Length: 323

Fln nts: CTCCACCTCAATTAACTTCCGCTATTTTTTATCACGGAAATCTTCGCTTCAGCTTCCTTTTTAAGATCAAGGGTTTCTCAGCGAAAAGGTAAAACTAGGAA_-_ATGGCAGCTGCGGATCAGGCCGGAAACAACTTCGACGCCAAGAGCTATGACAAAAACATGCAGAGCGTCCTTGGAGGAGAAGAACTTTACTCTACCTGGGAGGAGGTTCATGAAACTTTTGACTCCATGGGGCTTCAGGAAAACCTTTTAAGAGGAATTTATGCATATGGTTTTGAGAAGCCATCTGCCATCCAGCAGAGAGGGATTGTTCCTTTCTGCCAAGGTCTTGATGTTATCCAGCAAGCACAATCAGGAACAGGAAAGACTGCAACTTTCTGTTCAGGAATTCTACAACAGTTGGACTACAGTATGCCTGAGTGTCAAGCTCTAGTTTTGGCCCCGACACGAGAACTAGCTCAGCAGATTGAGAAAGTTATGAGGGCACTTGGTGATTACCTTCAAGTAAGAGTACATGCATGTGTTGGTGGGACAAGCATCCGAGAGGACCTCCGTATTCTCCAAGCTGGTGTTCATGTTGTTGTGGGGACACCAGGTAGGGTCTATGATATGCTGCGGCGGCGTGCCTTGCGTCCAGACTCAATCAAAATGTTTGTGCTTGATGAAGCAGATGAAATGCTATCACGTGGATTTAAGGATCAGATATATGATATCTTTCAATTGCTACCTGCAAATCTCCAAGTTGGTGTTTTCTCTGCCACCATGCCTCCTGAGGCCTTGGAGATTACGAGGAAGTTCATGACTAATCCGGTCAGGATTCTTGTGAAAAGAGACGAGCTTACGCTGGAGGGTATCAAACAATTCTATGTTAATGTAGAGCGAGAGGATTGGAAGCTTGATACACTATGTGATCTGTATGAAACTTTGGCAATCACACAGAGTGTGATTTTCATCAATACCAGGAGGAAGGTAGATTGGCTGACAGATCAAATGCGAGCTCGGGATCACACAGTTTCTGCAACCCATGGTGACATGGATCAGAACACAAGAGACATCATTATGAGGGAAT

Fln Alignment:

Contig6102___MAAADQAGNNFDAKSYDKNMQSVLGGEELYSTWEEVHETFDSMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCQGLDVIQQAQSGTGKTATFCSGILQQLDYSMPECQALVLAPTRELAQQIEKVMRALGDYLQVRVHACVGGTSIREDLRILQAGVHVVVGTPGRVYDMLRRRALRPDSIKMFVLDEADEMLSRGFKDQIYDIFQLLPANLQVGVFSATMPPEALEITRKFMTNPVRILVKRDELTLEGIKQFYVNVEREDWKLDTLCDLYETLAITQSVIFINTRRKVDWLTDQMRARDHTVSATHGDMDQNTRDIIMRE
C0PSP8_________________MAGVDQAGNNFDAKSYDKNMQSVLGGEELYSTWEEVHETFDSMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCQGLDVIQQAQSGTGKTATFCSGILQQLNYNVPECQALVLAPTRELAQQIEKVMRALGDYLQVRVHACVGGTSIREDLRILQAGVHVVVGTPGRVYDMLRRRALRPDSIKMFVLDEADEMLSRGFKDQIYDIFQLLPTNLQVGVFSATMPPEALEITRKFMTNPVRILVKRDELTLEGIKQFYVNVEREDWKLDTLCDLYETLAITQSVIFINTRRKVDWLTDQMRARDHTVSATHGDMDQNTRDIIMRE

SNPs (tot: 22)

Position	A %	C %	G %	T %	Probability
211			75	25	0.996473
212			25	75	0.996473
377	75		25		0.996473
527		66		33	0.997452
611	83		16		0.994512
722	16			83	0.994512
740	66		33		1.0
749	16		83		0.994512
758	83	16			0.994512
773		83		16	0.994512
779	16		83		0.994512
803		20		80	0.995493
820	66		33		0.997452
842	33		66		0.997452
845	33		66		0.997452
851	66		33		0.997452
859			66	33	0.997452
860	66	33			0.997452
863		66		33	0.997452
878	33		66		0.997452
902	33		66		0.997452
924		66		33	0.997452

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain