SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene6056

Length: 498 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog2_v2.0_unigene6056
AAGTCTACTTTGAGCCATGTGAAGGAGACAGACTCGTGTTGGAACAGGTTATTGAGTCACAGGGTTCCTATATACGGGATGCAGTTGGCTCACCATTGCTTCCTTCTATTCTCTGTCCACCTTATGCTGTAATCCTTGCATCTGAAAATTTTAGTGGTGTTGCTGGGATGTCATTCACAATAAGGCTATCAAGACCATCTTTGGTATTCATCAATAATGCACTTAGTAAGTTGTGTTCAGACAATGAGACAAATGCAAATGGTGTAAAAGTGTATCTGCTTTCTAGGGATCATTTGAACCTAAAGGCAGAGCTTCTGTCTGCCAATGGCAAGGTCCGTGTAGCATGCATAGAAGGGCAGCCACCTCTTGATATTTGCCTCGGACAGCATTTGTATCTGTCAGTTGGTGATTATTACCTTAGTTTGAGAACATGATGATATAGTTTTGCTTCACCTTTTTCCAACTCGAGGAGTGTCATCCGAGGTGTATATTATAATG

Ace file of the UniGene biog2_v2.0_unigene6056 (antisense)

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene8843	9/9

Source	Descriptions	Term	Type	Identity
AutoFact	isoleucyl-tRNA synthetase [Arabidopsis thaliana] gb\|AEE82867.1\| isoleucyl-tRNA synthetase [Arabidopsis thaliana]	-	-	67%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	52%
Blast2go	isoleucyl-trna cytoplasmic-like	-	-	82%

Source	ECs	Term	Type	e value	Identity
Blast2go	Isoleucine--tRNA ligase.	EC:6.1.1.5	-	0.0	82%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Valine, leucine and isoleucine biosynthesis	00290		0.0	82%
Blast2go	Aminoacyl-tRNA biosynthesis	00970		0.0	82%

Source	GOs	Term	Type	Identity
Blast2go	response to cadmium ion	GO:0046686	Biological Process	82%
Blast2go	isoleucyl-tRNA aminoacylation	GO:0006428	Biological Process	82%
Blast2go	ATP binding	GO:0005524	Molecular Function	82%
Blast2go	isoleucine-tRNA ligase activity	GO:0004822	Molecular Function	82%
Blast2go	zinc ion binding	GO:0008270	Molecular Function	82%
Blast2go	cytosol	GO:0005829	Cellular Component	82%

Source	InterPros	Term	Type	Identity
Sma3	Aminoacyl-tRNA synthetase, class I, conserved site	IPR001412	-	-
Sma3	Aminoacyl-tRNA synthetase, class Ia	IPR002300	-	-
Sma3	Isoleucyl-tRNA synthetase	IPR002301	-	-
Sma3	Valyl/Leucyl/Isoleucyl-tRNA synthetase, class I, anticodon-binding	IPR013155	-	-
Sma3	Rossmann-like alpha/beta/alpha sandwich fold	IPR014729	-	-
Sma3		IPR015905	-	-
Sma3		IPR018353	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: tr_plants

Fln subject: F6HYQ5

Fln msg: your sequence is shorter than subject: 144 - 1183

Fln protein: VYFEPCEGDRLVLEQVIESQGSYIRDAVGSPLLPSILCPPYAVILASENFSGVAGMSFTIRLSRPSLVFINNALSKLCSDNETNANGVKVYLLSRDHLNLKAELLSANGKVRVACIEGQPPLDICLGQHLYLSVGDYYLSLRT*

Protein Length: 145

Fln nts: AAGTCTACTTTGAGCCATGTGAAGGAGACAGACTCGTGTTGGAACAGGTTATTGAGTCACAGGGTTCCTATATACGGGATGCAGTTGGCTCACCATTGCTTCCTTCTATTCTCTGTCCACCTTATGCTGTAATCCTTGCATCTGAAAATTTTAGTGGTGTTGCTGGGATGTCATTCACAATAAGGCTATCAAGACCATCTTTGGTATTCATCAATAATGCACTTAGTAAGTTGTGTTCAGACAATGAGACAAATGCAAATGGTGTAAAAGTGTATCTGCTTTCTAGGGATCATTTGAACCTAAAGGCAGAGCTTCTGTCTGCCAATGGCAAGGTCCGTGTAGCATGCATAGAAGGGCAGCCACCTCTTGATATTTGCCTCGGACAGCATTTGTATCTGTCAGTTGGTGATTATTACCTTAGTTTGAGAACATGA___TGATATAGTTTTGCTTCACCTTTTTCCAACTCGAGGAGTGTCATCCGAGGTGTATATTATAATG

Fln Alignment:

Contig6056___VYFEPCEGDRLVLEQVIESQGSYIRDAVGSPLLPSILCPPYAVILASENFSGVAGMSFTIRLSRPSLVFINNALSKLCSDNETNANGVKVYLLSRDHLNLKAELLSANGKVRVACIEGQPPLDICLGQHLYLSVGDYYLSLRT
F6HYQ5_________________VYFESLDEDLSAMQQVLDSQEVYIRDALGSPLLPSSMIQPHTVILCEESFHGVSKFDFVIRLARPTLVFNTNAVLALYSGNTKFAQGLQAYLFSRDHYNLKSEFQLGNSKIKVDCIENQPAVDVVLGKHVLLTVGDYYSSEKT

SNPs (tot: 14)

Position	A %	C %	G %	T %	Probability
100	83		16		0.994512
174		16		83	0.994512
192	16		83		0.994512
204	71		28		1.0
332	11	88			0.923564
336			88	11	0.923564
338	87	12			0.992554
339	87	12			0.992554
342		83		16	0.994512
344	60	40			1.0
346		40		60	1.0
348	60			40	1.0
356			33	33	0.997753
393	66	33			0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain