SustainPineDB

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene6015

Length: 1367 nt

UniGene Fasta

Ace file of the UniGene biog2_v2.0_unigene6015

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene24873	6/38
SustainPine v2.0	sp_v2.0_unigene60823	31/38

Source	Descriptions	Term	Type	Identity
AutoFact	WRKY transcription factor NtEIG-D48 [Nicotiana tabacum]	-	-	38%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	87%
Blast2go	wrky transcription factor 11	-	-	58%

Source	GOs	Term	Type	e value	Identity
Blast2go	protein binding	GO:0005515	Molecular Function	0.0	58%

Source	InterPros	Term	Type	Identity
Sma3	Major intrinsic protein	IPR000425	-	-
Sma3	DNA-binding WRKY	IPR003657	-	-
Sma3	Zn-cluster domain	IPR018872	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5AD76

Fln msg:

Fln protein: MAVEMLDSRNFMDRDVHQAASATLESVQNLIQLISRHREMQDERESQCGSAAEMAANRFKRVVSMLGTTTGHARFRKAPAGSSVPAPKISPPFEPGHANMSSAAAASCSSQEPLKDSEGFISPAPLNNNTLFRPTPLHVQAPAQNPVMDLSPQQPKISLVPVNSDYSFMGSRSFKESVISSSPLSSTNSFISTLTASDPCDKTSILVRSLSPTAVGRPPLSSSKKACIHGKPDDLSGKCNTTGGRCHCSSKRKKSRVKRTIRVPAVSAKLADIPSDEFSWRKYGQKPIKGSPHPRGYYKCSTVRGCPARKHVERALDDPNVLIVTYEGEHSHSHSVSENTGLVLDS*

Protein Length: 348

Fln nts: ATGGGGGCTGCAAGAAGAAGATAAGGCACGGGCACCCGTTAGTGGTGGCTGCTTTATGCGGAGAGATGAATTCGGGGGGCTCTGCCGAGAATTGCAGGGGATTTTGGCCGGAGAGTTGCTGAAGATTCAAGAAGTTCTGGATTTGAGTGAAAAGAC_-_ATGGCCGTAGAGATGCTGGACTCCAGGAATTTCATGGACCGCGACGTGCACCAGGCGGCTTCTGCAACGCTGGAGAGCGTGCAGAATCTGATACAATTAATATCCCGGCACCGGGAAATGCAAGATGAAAGAGAGAGCCAGTGCGGGTCTGCCGCAGAAATGGCAGCAAATCGATTTAAAAGGGTTGTTTCTATGCTCGGAACCACGACAGGCCATGCTCGCTTCAGAAAAGCCCCAGCGGGATCTTCAGTTCCGGCTCCCAAAATTTCTCCCCCTTTCGAACCCGGCCATGCGAATATGTCTTCTGCCGCTGCTGCATCTTGTTCTTCTCAAGAACCCTTGAAGGATTCTGAAGGTTTTATCTCCCCTGCGCCATTAAATAATAACACCCTGTTCCGTCCCACCCCGTTGCACGTCCAGGCCCCTGCACAGAACCCTGTTATGGACTTAAGCCCTCAGCAGCCCAAGATTTCATTAGTGCCAGTAAATTCAGATTACAGCTTCATGGGTTCCAGGTCCTTTAAAGAGTCAGTGATCTCTTCCTCCCCATTATCCTCCACTAACTCCTTCATTTCAACACTCACAGCATCGGATCCGTGCGATAAAACTTCTATACTGGTTCGATCTCTCAGCCCAACAGCCGTAGGCCGACCGCCATTATCGTCCTCTAAGAAAGCTTGCATCCATGGAAAACCTGACGATCTCTCAGGAAAGTGTAACACTACAGGCGGACGCTGCCACTGCTCTTCAAAACGCAAGAAGTCCAGAGTGAAAAGAACTATCAGAGTACCTGCAGTCAGTGCAAAATTGGCGGACATTCCATCTGATGAATTCTCATGGCGAAAATATGGACAGAAGCCCATTAAGGGCTCTCCACATCCAAGAGGCTATTACAAATGCAGCACAGTGAGAGGTTGCCCTGCAAGAAAGCACGTAGAACGCGCCCTGGACGATCCAAACGTATTGATTGTAACATATGAGGGCGAACACAGCCATTCTCATTCTGTATCTGAAAACACAGGCCTGGTACTGGATTCGTGA___GACCCACATACAGACAAAGGCATTATTCTAGTTTTATATTACGCTACAGAATCCGCCATTATTTCAGGCGGGATGGTGACTGTTTTTAGCGCAATCTCCATGGGCGTTGCATGCCCACTACAGTGTTTTTTGCAATTTGGTACGAGACAAGATTAATGCAAAATCCATAG

Fln Alignment:

Contig6015___MAVEMLDSRNFMDRDVHQAASATLESVQNLIQLISRHREMQDERESQCGSAAEMAANRFKRVVSMLGTTTGHARFRKAPAGSSVPAPKISPPFEPGHXXXXXXXXXXXXXQEPLKDSEGFISPAPLNNNTLFRPTPLHVQAPAQNPVMDLSPQQPKISLVPVNSDYSFMGSRSFKESVISSSPLSSTNSFISTLTASDPCDKTSILVRSLS-PTAVGRPPLSSSKKACIHGKPDDLSGKCNTTGGRCHCXXXXXXXXXXXTIRVPAVSAKLADIPSDEFSWRKYGQKPIKGSPHPRGYYKCSTVRGCPARKHVERALDDPNVLIVTYEGEXXXXXXVSENTGLVLDS
D5AD76_________________MAVEMLDSRNFMERDVHQAASATLESVQNLIQLLSRHREMQDEGESQCGFAAEIAANRFKRVVSMLGTTTGHARFRKAPTGSSVLSPKICPSFEAGYANISASSSSS---HEAFRDSEGFISPAPLNNNTLYRPTPLHVQAPPQSPVMDSTPQQHKIPLLPMNSDYSFMGSRPFKEPVISSPPISSTNSFISSLTASDPCDKTSMLVRSLSSPTAVGRPPLSSSKKACIHGKPDDLSGKCNTTGGRCHCSSKRKKSRVKRTIRVPAISAKLADIPSDEFSWRKYGQKPIKGSPHPRGYYKCSTVRGCPARKHVERALDDPNVLIVTYEGEHSHSHSVSENTGLVLDS

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
607	75			25	0.996473
1172	88		11		0.923564

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain