SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene6010

Length: 1159 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog2_v2.0_unigene6010 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene16250	9/16
SustainPine v2.0	sp_v2.0_unigene31165	7/16

Source	Descriptions	Term	Type	e value	Identity
AutoFact	protein TIFY 8 [Arabidopsis thaliana] sp\|Q84MB2.1\|TIF8_ARATH RecName: Full=Protein TIFY 8 gb\|AAP21239.1\| At4g32570 [Arabidopsis thaliana] gb\|AEE86081.1\| protein TIFY 8 [Arabidopsis thaliana]	-	-	2.0e-18	40%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	92%
Blast2go	protein	-	-	0.0	52%

Source	GOs	Term	Type	e value	Identity
Blast2go	protein binding	GO:0005515	Molecular Function	0.0	52%

Source	InterPros	Term	Type	e value	Identity
Sma3	Tify	IPR010399	-	0.0	-

Full-Lengther Next Prediction

SNPs (tot: 8)

Position	A %	C %	G %	T %	Probability
929		16		83	0.994512
930		16	83		0.994512
931	16			83	0.994512
932	16			83	0.994512
934	16	83			0.994512
945		20		80	0.995493
947		20		80	0.995493
948	20	80			0.995493

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain