SustainPineDB

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene6003

Length: 1379 nt

UniGene Fasta

Ace file of the UniGene biog2_v2.0_unigene6003

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene14428	79/79

Source	Descriptions	Term	Type	e value	Identity
AutoFact	PREDICTED: similar to PDF n=1 Tax=Vitis vinifera RepID=UPI0001984437	-	-	2.0e-29	44%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	70%
Blast2go	protodermal factor	-	-	0.0	55%

Source	GOs	Term	Type	e value	Identity
Blast2go	cell part	GO:0044464	Cellular Component	0.0	55%

Source	InterPros	Term	Type	e value	Identity
Sma3	Aminoacyl-tRNA synthetase, class I, conserved site	IPR001412	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5ADM5

Fln msg: your sequence is shorter than subject: 324 - 349

Fln protein: MALWSCGTVFLYMLVSIQLVHGSADTSFEPNKCDCSPPVAPSVPDIGSPIGGSYSPPDGGISSPSIPGSPPSYSPPEDGGNTPPIISTPPSPYVSSTPPLTPPYSTTPPSPSTTPSTPAYGSSPPTPTTPSYGTPSSPTTPSTPDYTPPSTGGAPLPTPSTPDYGVPTVASPPPDYSVPSTPDGAGSVPPLPGLSPPDVGSTPVIEDPGSSTGTCNFWGSHPNYLPSILSFFSTISDLFGGGFSPVFRADMTLQEALTNTRRDGYGSLLREGSASLLNSLVNKNFVLSTQEVKQKFNAALSSNHAAAVQATKFKSANEGRLSP*

Protein Length: 325

Fln nts: ATGGGGATATCAGTGGAAAAATAATTACAATTGAAAGTGTTTGTGTAGCC_-_ATGGCCCTGTGGAGTTGTGGTACAGTGTTTTTGTACATGTTGGTGTCTATCCAGCTGGTTCATGGTTCAGCAGACACCAGTTTTGAACCAAATAAGTGCGATTGCAGTCCTCCGGTGGCTCCTTCAGTTCCTGATATAGGTTCACCAATTGGTGGATCTTACAGTCCTCCAGATGGTGGAATCTCCTCACCCAGCATTCCTGGGTCCCCTCCATCTTACAGCCCTCCAGAGGACGGTGGGAACACACCACCCATTATCAGTACTCCCCCAAGTCCTTATGTCTCATCAACTCCTCCCCTGACACCACCCTACTCTACCACCCCACCCTCACCATCTACAACCCCATCTACTCCCGCCTATGGATCTTCCCCTCCAACACCAACTACTCCTTCCTATGGCACACCCTCTTCTCCTACAACCCCATCAACACCAGATTACACTCCTCCCTCTACTGGAGGAGCTCCTCTCCCTACTCCATCCACACCTGACTATGGTGTTCCGACCGTTGCTTCCCCTCCACCTGACTATTCTGTGCCTTCCACTCCTGATGGGGCTGGGTCTGTGCCCCCTTTACCTGGTTTATCCCCTCCTGATGTTGGCTCCACCCCAGTCATTGAGGACCCTGGATCTTCTACAGGCACCTGCAACTTTTGGGGAAGTCATCCAAATTATTTGCCAAGCATCCTCTCTTTTTTCAGCACCATCTCAGATCTCTTTGGAGGTGGGTTCTCTCCTGTATTTCGTGCAGACATGACACTGCAGGAGGCGTTAACAAACACACGTAGAGATGGGTATGGATCGCTTCTGAGAGAAGGAAGCGCATCCCTCTTGAACTCTCTTGTCAACAAAAATTTTGTGTTATCCACCCAGGAAGTGAAGCAAAAGTTCAATGCAGCTCTGTCTTCCAACCATGCTGCTGCAGTGCAGGCTACAAAGTTCAAATCTGCCAATGAAGGACGTTTGTCACCCTGA___GACACGAGTTTTCGTGTGAATGTAGTTACGCTTTTTAGGTCTTTTTCATCCATCTGCATTTTTAGATGTATTGCACATAGAGTTTAGGGTTTTATGTCTGTTTGTAAAATTGGATAAGAAACTTAATTGCGAAGCCGAGATTTAGGAGTATGGTTCATCCTGTCCCAATGTCATCCTTTTGTCCAAAATCAATATGCGAAAGCTCAACGTGTGCCCCTCCATGTTGCAATGTCTCAGCTTTTTCTCCAAAATATATCTTAGTGTCTGAAACAAACAGCAGTGTGTTTGAGAAATCAATCAGTTTAGAATGAAACTATGTTTTGAATATGTCAATTTTTATAATGAACATCACTGTGC

Fln Alignment:

Contig6003___MALWSCGTVFLYMLVSIQLVHGSADTSFEPNKCDCSP
D5ADM5_________________MAVWSCSIVFLSILVSSQVVHGSADAIFEPDKCHCSP

SNPs (tot: 17)

Position	A %	C %	G %	T %	Probability
8			25	75	0.996473
147		14		85	0.993533
149		87		12	0.992554
183			87	12	0.992554
296	85		14		0.999981
315		61		7	1.0
592		90		10	0.90298
608	12		87		0.992554
663	75		25		0.996473
667	50		50		1.0
795		25		75	0.996473
1052		75		25	0.996473
1199	14	85			0.993533
1201			14	85	0.993533
1202			14	85	0.993533
1203			14	57	1.0
1258		71		28	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain