SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene5981

Length: 843 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog2_v2.0_unigene5981 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene7238	14/16
SustainPine v2.0	sp_v2.0_unigene78777	2/16

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Tim17 domain-containing protein n=3 Tax=Arabidopsis RepID=F4IMZ5_ARATH	-	-	9.0e-33	48%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	94%
Blast2go	tim17 domain-containing protein	-	-	0.0	75%

Source	GOs	Term	Type	Identity
Blast2go	protein transport	GO:0015031	Biological Process	75%
Blast2go	P-P-bond-hydrolysis-driven protein transmembrane transporter activity	GO:0015450	Molecular Function	75%
Blast2go	plastid outer membrane	GO:0009527	Cellular Component	75%
Blast2go	mitochondrial inner membrane presequence translocase complex	GO:0005744	Cellular Component	75%
Blast2go	mitochondrial respiratory chain complex I	GO:0005747	Cellular Component	75%
Blast2go	integral to membrane	GO:0016021	Cellular Component	75%
Blast2go	chloroplast	GO:0009507	Cellular Component	75%

Full-Lengther Next Prediction

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
420	88			11	0.923564
463	14		85		0.993533

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain