SustainPineDB

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene5955

Length: 1029 nt

UniGene Fasta

Ace file of the UniGene biog2_v2.0_unigene5955

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene16324	23/28
SustainPine v2.0	sp_v2.0_unigene17070	1/28
SustainPine v2.0	sp_v2.0_unigene23924	3/28
SustainPine v2.0	sp_v2.0_unigene60691	1/28

Source	Descriptions	Term	Type	Identity
AutoFact	Sucrose synthase n=1 Tax=Pinus taeda RepID=A6N837_PINTA	-	-	98%
FL-Next	tr=Sucrose synthase; Pinus taeda (Loblolly pine).	-	-	99%
Blast2go	sucrose synthase	-	-	86%

Source	InterPros	Term	Type	Identity
Sma3	Sucrose synthase	IPR000368	-	-
Sma3	Glycosyl transferase, family 1	IPR001296	-	-
Sma3	Glycosyl transferase, family 20	IPR001830	-	-
Sma3	DNA methylase, N-6 adenine-specific, conserved site	IPR002052	-	-
Sma3	Trehalose-phosphatase	IPR003337	-	-
Sma3	Sucrose synthase, plant/cyanobacteria	IPR012820	-	-
Sma3	Reverse transcriptase, RNA-dependent DNA polymerase	IPR013103	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A6N837

Fln msg: your sequence is shorter than subject: 266 - 833

Fln protein: NDRKKPIIFSMARLDRVKNMTGLVEWFAKNKRLRELVNLVVVAGDIDPSKSKDREEVAEIEKMHRLVKEYNLNGQFRWICAQKNRVRNGELYRYICDTRGAFVQPALYEAFGLTVVEAMTCGLPTFATCNGGPAEIIVDGVSGFHIDPYHGVSATERIADFFEKCKTDPSHWEKISNGGLQRIYEKYTWQIYADRLMTLSGVYGFWKYVSKLERRETRRYLEMFYSLKYRNLVKTVPLAVEESANGIEEKSTELLATNGTLVHNH*

Protein Length: 267

Fln nts: AATGACCGTAAAAAGCCCATTATCTTCTCTATGGCAAGACTCGACCGGGTGAAAAATATGACAGGACTGGTTGAATGGTTTGCAAAGAACAAACGCTTGAGGGAGCTGGTTAACCTTGTTGTGGTTGCTGGTGATATTGACCCATCAAAGTCCAAAGACAGAGAAGAAGTGGCCGAAATTGAAAAAATGCATCGACTAGTTAAAGAGTATAACCTGAATGGTCAGTTCAGATGGATATGTGCACAAAAGAATAGAGTCCGGAACGGTGAGCTTTACCGCTACATCTGTGACACCAGGGGTGCCTTTGTACAGCCTGCACTTTATGAAGCTTTTGGGCTTACTGTTGTTGAAGCAATGACATGTGGTCTTCCTACATTCGCAACCTGTAATGGGGGTCCTGCTGAAATTATTGTCGATGGGGTGTCCGGATTTCATATTGATCCCTACCATGGCGTTTCTGCAACTGAACGCATTGCTGATTTTTTCGAGAAGTGCAAGACAGATCCCAGTCATTGGGAGAAGATCTCTAATGGTGGTCTACAGCGTATCTATGAAAAGTATACATGGCAGATTTATGCCGACAGATTAATGACGCTGTCTGGAGTTTATGGGTTTTGGAAGTATGTATCAAAACTTGAAAGGCGAGAGACACGCCGCTATCTGGAGATGTTTTACAGCTTAAAGTACAGAAATCTGGTTAAAACTGTCCCATTAGCTGTTGAAGAAAGTGCCAATGGGATTGAAGAGAAGAGTACAGAATTGCTTGCAACCAACGGAACCTTGGTTCATAATCATTGA___GTGCCACAGCTCCTCTCCTGGTTAATAAGCACTGAGTGGCAGAATAAGTGTCAAGAAGAGGCTGTTTCATTATTCAACTTTCAGAGTATGTGAGAGGGGTTTGGTAATTTTGTGTTTGAGTTTTATGTATTCGTATTTTCTATGGAGGTCTGGCATTCTTCTAATGGAAATCATGGTGCAGTCGATGAACTGCTCATGACTCCGAGGTGCCTGACACCATGACAAATAATT

Fln Alignment:

Contig5955___NDRKKPIIFSMARLDRVKNMTGLVEWFAKNKRLRELVNLVVVAGDIDPSKSKDREEVAEIEKMHRLVKEYNLNGQFRWICAQKNRVRNGELYRYICDTRGAFVQPALYEAFGLTVVEAMTCGLPTFATCNGGPAEIIVDGVSGFHIDPYHGVSATERIADFFEKCKTDPSHWEKISNGGLQRIYEKYTWQIYADRLMTLSGVYGFWKYVSKLERRETRRYLEMFYSLKYRNLVKTVPLAVEESANGIEEKSTELLATNGTLVHNH
A6N837_________________NDRKKPIIFSMARLDRVKNMTGLVEWFAKSKRLRELVNLVVVAGDIDPSKSKDREEVAEIEKMHRLVKEYNLNGQFRWICAQKNRVRNGELYRYICDTRGAFVQPALYEAFGLTVVEAMTCGLPTFATCNGGPAEIIVDGVSGFHIDPYHGVSATERIADFFEKCKTDPSHWEKISNGGLQRIYEKYTWQIYADRLMTLSGVYGFWKYVSKLERRETRRYLEMFYSLKYRNLVKTVPLAVEESVNGIEEKSTELLATNGTLVHNH

SNPs (tot: 20)

Position	A %	C %	G %	T %	Probability
355	83		16		0.994512
358	83		16		0.994512
395	16		66		0.988813
432	14			85	0.993533
436	85		14		0.993533
437			14	85	0.993533
438			14	85	0.993533
506	14	85			0.993533
525	12	87			0.992554
527		87	12		0.992554
528			14	85	0.993533
529	85		14		0.993533
564	83			16	0.994512
632	83	16			0.994512
639	85			14	0.993533
640	85		14		0.993533
682	88			11	0.923564
683	88		11		0.923564
740		10		90	0.90298
881	88			11	0.923564

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain