SustainPineDB

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene5949

Length: 2038 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog2_v2.0_unigene5949
ATGGGGACAAGGGTTCGAATTCTAAGATTGAAACCCTCAAATACTCGTCGAGTTCCGCATAAAAGCCCGCAGACGGTCGTCTCTGGAGATAGCTTAACGTACGCAGAGTGATTGGCTGTGTAAAGACGTTTATTTTCAGGTGGTTTGCAGGCATTTTTTGATGGTCTCCATGGATCGGAGATGGATTCCATTGCTTTTGGCTCTGCTGTGCCTAATGTCACCGTTAAATGCCCTCGTTTCCGCTTCTGAATCGACTTTCTATGAATCTTTTGACGAGTCGTTCGAAGGGAGATGGATCGTATCCCAAAAGGAAGATTATAAAGGTGTATGGAAGTACGAAAAGAGTAAAGGTCATGAAGACTATGGTCTCCTTGTGAGTGAAGTGGCCAGAAAGTATGCCATAGTAAGAGAATTACCAGAGACCATTGACCCCAAGGACGGGTCACTGGTGTTACAGTATGAGGTCCGCTTACAAAATGGGCTGGAGTGTGGAGGTGCTTACTTGAAGTACCTACGGCCTCAAGAAGCTGGATGGAAACCAGCAGAGTTTGACAATGAATCCCCCTACTCCATCATGTTTGGACCAGATAAATGCGGTGCTACTAACAAAGTACACTTCATCTTCAAGCACAAGAATCCAAAGTCCGGGGAATATGTTGAGCACCATCTCAAGTATCCTCCATCTACGCCCTCTGACAAGAAGACTCATGTTTATTCAGCCATCTTGACACCTGATAATCAAGTTAGAATTTTAATTGATGGCGAAGAGAAGAAAAAGGCAAATCTTTTGTCTGCGGATGATTTTGAACCAGCCCTTATCCCACCTAAGACAATTCCCGACCCAGAGGATAAGAAGCCAGAAGACTGGGATGAGAGAGCAAAGATCCCTGATCCTGATGCGGAAAAGCCCGAGGACTGGGATGAGGATGCACCGATGGAAATTGAAGATGTGGAAGCCGTGAAGCCGGAAGGATGGCTGGATGATGAACCAGAGGAGATTGATGATCCTGAAGCTACAAAGCCAGATGATTGGGATGATGAAGAAGATGGAGAATGGGAGGCACCAAAGGTTTCTAATCCCAAGTGCGATGAGGCACCAGGATGTGGTGAATGGACTAGACCCATGAAGAGCAACCCTGACTACAAGGGCAAGTGGTATGCTCCGATGATTGACAATCCTAACTACAAGGGTATCTGGAAGCCACAAGAAATTCCCAACCCTGAGTACTTTGAATTGGAGAAGCCTGATTTAGAACCAATTGCAGCTATTGGTATTGAAATCTGGACTATGCAAGATGGAATCTTGTTTGACAACATACTTATCACACATGATGAGAAGGTTGCGGAGGAGTACAGAAAGAATGCGTGGAAGGGAAAATTTAGCAATGAAAAAGAAGAGGAAGATGTGGATAGTCCTCTGCCGGGAGAGCTCTCTGGTTTCCAGAAGAAAATTTTTGACGTCCTCTACAAGATCGCAAACATCCCATTCTTGGATGCATACAAGTTGAAGATTATTGATCTAATCGAACAAGGTGAGAAGAAACCAAATTTGACAATAGGCATTTTAGTGGCCGTTTTGGTGGTTCTGTTGACAACAATTTACAAGCTCCTTTTCGGTGGCAAGAAGCAACCTGTTCAGAAGGTAGAGTTGAAAAGTCAGCCCGAGCAGGATGCTTCTGCTTCTGAGAATAACAAAGAAGATTCAGATCGTGCAGCAGAGAATGAAAAATCTGATGCAGCAGAGAAGGAAAAGTCTGGAGATGAAAATGAAATAGAAGGAGAAGATGCAGCTCCCCGCAGGAGAGTAAGGCGCGAGACATAAATCCTAGTTCACTGAGGAAAAATTTCGGACATTAAAGTTCAGTGTATGGAATGAACAAATCTTTCAAAATTCATCCATCTGTTTTTGGTTGTAAGTCATAGATAAAATAGGAGGAACGGTCAGAGAATCTGCATCCCCATCATGCGTGGTGGATTTGGATAACATTTTTTCCAGAGTTCTGTTTCTAGGTGTTTGTTAGACATTTGGGAGCATAGC

Ace file of the UniGene biog2_v2.0_unigene5949 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene15910	147/150
SustainPine v2.0	sp_v2.0_unigene32856	1/150

Source	Descriptions	Term	Type	Identity
AutoFact	calnexin-like protein [Solanum lycopersicum]	-	-	62%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	88%
Blast2go	calnexin-like protein	-	-	82%

Source	GOs	Term	Type	e value	Identity
Blast2go	cell part	GO:0044464	Cellular Component	0.0	82%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: C0PT78

Fln msg:

Fln protein: MVSMDRRWIPLLLALLCLMSPLNALVSASESTFYESFDESFEGRWIVSQKEDYKGVWKYEKSKGHEDYGLLVSEVARKYAIVRELPETIDPKDGSLVLQYEVRLQNGLECGGAYLKYLRPQEAGWKPAEFDNESPYSIMFGPDKCGATNKVHFIFKHKNPKSGEYVEHHLKYPPSTPSDKKTHVYSAILTPDNQVRILIDGEEKKKANLLSADDFEPALIPPKTIPDPEDKKPEDWDERAKIPDPDAEKPEDWDEDAPMEIEDVEAVKPEGWLDDEPEEIDDPEATKPDDWDDEEDGEWEAPKVSNPKCDEAPGCGEWTRPMKSNPDYKGKWYAPMIDNPNYKGIWKPQEIPNPEYFELEKPDLEPIAAIGIEIWTMQDGILFDNILITHDEKVAEEYRKNAWKGKFSNEKEEEDVDSPLPGELSGFQKKIFDVLYKIANIPFLDAYKLKIIDLIEQGEKKPNLTIGILVAVLVVLLTTIYKLLFGGKKQPVQKVELKSQPEQDASASENNKEDSDRAAENEKSDAAEKEKSGDENEIEGEDAAPRRRVRRET*

Protein Length: 555

Fln nts: ATGGGGACAAGGGTTCGAATTCTAAGATTGAAACCCTCAAATACTCGTCGAGTTCCGCATAAAAGCCCGCAGACGGTCGTCTCTGGAGATAGCTTAACGTACGCAGAGTGATTGGCTGTGTAAAGACGTTTATTTTCAGGTGGTTTGCAGGCATTTTTTG_-_ATGGTCTCCATGGATCGGAGATGGATTCCATTGCTTTTGGCTCTGCTGTGCCTAATGTCACCGTTAAATGCCCTCGTTTCCGCTTCTGAATCGACTTTCTATGAATCTTTTGACGAGTCGTTCGAAGGGAGATGGATCGTATCCCAAAAGGAAGATTATAAAGGTGTATGGAAGTACGAAAAGAGTAAAGGTCATGAAGACTATGGTCTCCTTGTGAGTGAAGTGGCCAGAAAGTATGCCATAGTAAGAGAATTACCAGAGACCATTGACCCCAAGGACGGGTCACTGGTGTTACAGTATGAGGTCCGCTTACAAAATGGGCTGGAGTGTGGAGGTGCTTACTTGAAGTACCTACGGCCTCAAGAAGCTGGATGGAAACCAGCAGAGTTTGACAATGAATCCCCCTACTCCATCATGTTTGGACCAGATAAATGCGGTGCTACTAACAAAGTACACTTCATCTTCAAGCACAAGAATCCAAAGTCCGGGGAATATGTTGAGCACCATCTCAAGTATCCTCCATCTACGCCCTCTGACAAGAAGACTCATGTTTATTCAGCCATCTTGACACCTGATAATCAAGTTAGAATTTTAATTGATGGCGAAGAGAAGAAAAAGGCAAATCTTTTGTCTGCGGATGATTTTGAACCAGCCCTTATCCCACCTAAGACAATTCCCGACCCAGAGGATAAGAAGCCAGAAGACTGGGATGAGAGAGCAAAGATCCCTGATCCTGATGCGGAAAAGCCCGAGGACTGGGATGAGGATGCACCGATGGAAATTGAAGATGTGGAAGCCGTGAAGCCGGAAGGATGGCTGGATGATGAACCAGAGGAGATTGATGATCCTGAAGCTACAAAGCCAGATGATTGGGATGATGAAGAAGATGGAGAATGGGAGGCACCAAAGGTTTCTAATCCCAAGTGCGATGAGGCACCAGGATGTGGTGAATGGACTAGACCCATGAAGAGCAACCCTGACTACAAGGGCAAGTGGTATGCTCCGATGATTGACAATCCTAACTACAAGGGTATCTGGAAGCCACAAGAAATTCCCAACCCTGAGTACTTTGAATTGGAGAAGCCTGATTTAGAACCAATTGCAGCTATTGGTATTGAAATCTGGACTATGCAAGATGGAATCTTGTTTGACAACATACTTATCACACATGATGAGAAGGTTGCGGAGGAGTACAGAAAGAATGCGTGGAAGGGAAAATTTAGCAATGAAAAAGAAGAGGAAGATGTGGATAGTCCTCTGCCGGGAGAGCTCTCTGGTTTCCAGAAGAAAATTTTTGACGTCCTCTACAAGATCGCAAACATCCCATTCTTGGATGCATACAAGTTGAAGATTATTGATCTAATCGAACAAGGTGAGAAGAAACCAAATTTGACAATAGGCATTTTAGTGGCCGTTTTGGTGGTTCTGTTGACAACAATTTACAAGCTCCTTTTCGGTGGCAAGAAGCAACCTGTTCAGAAGGTAGAGTTGAAAAGTCAGCCCGAGCAGGATGCTTCTGCTTCTGAGAATAACAAAGAAGATTCAGATCGTGCAGCAGAGAATGAAAAATCTGATGCAGCAGAGAAGGAAAAGTCTGGAGATGAAAATGAAATAGAAGGAGAAGATGCAGCTCCCCGCAGGAGAGTAAGGCGCGAGACATAA___ATCCTAGTTCACTGAGGAAAAATTTCGGACATTAAAGTTCAGTGTATGGAATGAACAAATCTTTCAAAATTCATCCATCTGTTTTTGGTTGTAAGTCATAGATAAAATAGGAGGAACGGTCAGAGAATCTGCATCCCCATCATGCGTGGTGGATTTGGATAACATTTTTTCCAGAGTTCTGTTTCTAGGTGTTTGTTAGACATTTGGGAGCATAGC

Fln Alignment:

Contig5949___MVSMDRRWIPXXXXXXXXXXXXXXLVSASESTFYESFDESFEGRWIVSQKEDYKGVWKYEKSKGHEDYGLLVSEVARKYAIVRELPETIDPKDGSLVLQYEVRLQNGLECGGAYLKYLRPQEAGWKPAEFDNESPYSIMFGPDKCGATNKVHFIFKHKNPKSGEYVEHHLKYPPSTPSDKKTHVYSAILTPDNQVRILIDGEEKKKANLLSADDFEPALIXXXXXXXXXXXXXXXXXERAKIPDPDAEKPEDWDEDAPMEIEDVEAVKPEGWLXXXXXXXXXXEATKPXXXXXXXXXXXEAPKVSNPKCDEAPGCGEWTRPMKSNPDYKGKWYAPMIDNPNYKGIWKPQEIPNPEYFELEKPDLEPIAAIGIEIWTMQDGILFDNILITHDEKVAEEYRKNAWKGKFSNEKE---EEDVDSPLPGELSGFQKKIFDVLYKIANIPFLDAYKLKIIDLIEQGEKKPNXXXXXXXXXXXXXXXXIYKLLFGGKKQPVQKVELKSQPEQDASASENNKEDSDRAAENEKSDAAEKEKSGDENEIEGEDAAPR-RRVRRET
C0PT78_________________MVSMDRRWIPSLLAAVCLISSLNVLVSASEQTFYESFDESFDGRWIASQKEDYKGVWKHEKSEGHEDYGLLVSEVAKKYAIVRELPETIDPKDGLVVLQYEVRLQNGLECGGAYLKYLRPQEAGWKPAEFDNESPYSIMFGPDKCGATNKVHFIYKHKNPKSGEYVEHHLKYPPSTPSDKLTHVYTAILKPNNEVRILIDGEEKKKANLLSGDDFEPALIPPETIPDPEDKKPEDWDERAKIPDPDAKKPEDWDEDAPMEIEDLEAVKPEGWLDDEPEEIDDPESTKPDDWDDEEDGEWEAPKVSNPKCDEAPGCGEWTRPMKSNPDYKGKWYAPMIDNPNYKGIWKPQQIPNPDFFELEKPDLEPIAAIGIEIWTMQDGILFDNILITGDEKVAEEYRVKTWKEKFTIEKEREPSEDVDVPLPGELSGLQKKIFDVLYRIANIPFLDAYKLKIIDLIEQGEKKPNLTIGILVAVLLVILTAVYRVLFGSKKQPVQVAELNTQPEQDASASENNKEASDGAAEN--------EKSGDENEIEGEDAAPRQRRVRRET

SNPs (tot: 15)

Position	A %	C %	G %	T %	Probability
1068		88		11	0.923564
1090	85	14			0.993533
1309		33	66		0.997452
1310		33		66	0.997452
1311	33		66		0.997452
1433	66		33		0.997452
1601	75		25		0.996473
1880	75	25			0.996473
1972		15	84		0.999986
1973		15	84		0.999986
1974		15	84		0.999986
1976	15			84	0.999986
2012	90	10			0.90298
2013		10		90	0.90298
2015	10			90	0.90298

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain