SustainPineDB

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene5938

Length: 1213 nt

UniGene Fasta

Ace file of the UniGene biog2_v2.0_unigene5938

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene16310	189/210
SustainPine v2.0	sp_v2.0_unigene61183	20/210

Source	Descriptions	Term	Type	Identity
AutoFact	Small heat-shock protein (Fragment) n=1 Tax=Pinus taeda RepID=B7ZEP8_PINTA	-	-	97%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	85%
Blast2go	small heat-shock protein	-	-	74%

Source	InterPros	Term	Type	e value	Identity
Sma3	Heat shock protein Hsp20	IPR002068	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NL04

Fln msg:

Fln protein: MATVASAKSNVLKSIVPAVKKCLLPSARPGDSAASVMCRGLSTAAVKYRPEDDSSIQDDRERRQAPEIRRGGWPNILEDSFFPLRSLGFGLDQLFDNPFLAASRGTGDVIRGGARKPWEAVEDKEALYLRVDMPGLGKEEIKVYAEENALVIKGESLSEAELDGSKQKYSSRIELPPKVYKLDQIKAQMKNGVLKVTVPKFTEEEIKNVINVAIE*

Protein Length: 217

Fln nts: ATGGGGATGCGGGAGATGAAAAAACCCTAAATCCGTTATTCTATCGGTAATGGTACGCATACTTTGCTCGGAAGAATATCTCCGATAATCGTTGGAACTTTCTGGTTACAGTCGAGAACGTTCCAGGACCTTCCGTGAGAAAGATTCACACTCCTTCCAGGACCTTCCTTGAGAAAGATTCACGCTGCTTCCAGAGCATGCGGAACTTAATAAATAAACATGTGATGGAGTATGACGGAGGGATCAGTGAGCAGGTTGTCGTCAGATTCGTGTTCGTTCTAACGAAATTTGCGAAGGGTTCTGTTTCTTCTTGGCTTACGCGAA_-_ATGGCTACTGTAGCTTCTGCAAAGAGTAATGTCTTGAAATCGATAGTTCCAGCCGTCAAGAAATGCCTGTTGCCTTCGGCCCGTCCAGGCGATTCCGCTGCCTCTGTAATGTGCCGGGGCTTGTCAACGGCGGCAGTGAAATACAGGCCCGAGGACGATTCGTCGATTCAAGATGACAGAGAAAGGCGTCAGGCTCCGGAAATCCGCCGCGGAGGTTGGCCTAATATTCTTGAGGATTCGTTTTTTCCTCTGAGGAGCTTGGGATTTGGCCTCGATCAGCTGTTCGATAACCCTTTCCTCGCGGCTTCTCGCGGGACAGGGGATGTGATCAGAGGCGGGGCGAGAAAGCCGTGGGAAGCTGTTGAAGATAAAGAAGCTCTGTATCTGCGGGTGGACATGCCGGGCCTAGGAAAGGAAGAAATCAAGGTTTATGCTGAGGAAAATGCCCTGGTGATAAAAGGGGAATCTCTCTCAGAGGCAGAATTGGACGGCAGTAAACAGAAATACAGTAGCCGCATCGAACTTCCCCCAAAAGTGTACAAGCTGGATCAAATCAAAGCGCAGATGAAGAATGGCGTGCTTAAGGTCACTGTCCCCAAGTTTACAGAAGAGGAGATCAAGAACGTGATTAATGTGGCGATCGAGTAG___AGGTTTTCAGTAGGGTTTTTGAATTCAAACACTGAAGCGCGGTAGTGTTATTTCTTGGGTTCTTGATCATTTTGCTTCGATAGGAGGGCCATAACAAGTGTCTATGAAATATAATAAAATGCTGAGAATATGTAATTTGGAGTTCAGGACTGTTTCAATGTTATCAGTCAATTTTGCTTTTATTGGGAAAAGCATGGTGCCCAGATTTCTAATATTAAAAGTTGGGTTTTTTTAATATTAA

Fln Alignment:

Contig5938___MATVASAKSNVLKSIVPAVKKCLLPSARPGDSAASVMCRGLSTAAVKYRPEDDSSIQDDRERRQAPEIRRGGWPNILEDSFFPLRSLGFGLDQLFDNPFLAASRGTGDVIRGGARKPWEAVEDKEALYLRVDMPGLGKEEIKVYAEENALVIKGESLSEAELDGSKQKYSSRIELPPKVYKLDQIKAQMKNGVLKVTVPKFTEEEIKNVINVAIE
A9NL04_________________MATVASAKSNVMKSVIPAVKKCLLPSGRPGDSAASAMCRSLSTAAAKYRPEYDSAIQDDKQNRQASETRRGGLPNIFGDPFYPLRSLGFGLDQLFDNPFLAASRGTGDAVRGGSRKPWDAVEDKEALHLRVDMPGLGKEDIKVYAEENALVIKGESVSDAELDGSARKYSSRIELPPKVYKLDHIKAQMKNGVLKVTVPKFTEQEIKNVINVNIE

SNPs (tot: 10)

Position	A %	C %	G %	T %	Probability
660		43		56	1.0
915		82		17	1.0
999	15		84		0.999986
1029		75	25		1.0
1050		25		75	1.0
1072		6	93		0.999264
1157			20	80	0.995493
1158	20		80		0.995493
1159		20	80		0.995493
1165			66	33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain