SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene5923

Length: 862 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog2_v2.0_unigene5923 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene24326	3/189
SustainPine v2.0	sp_v2.0_unigene24330	34/189
SustainPine v2.0	sp_v2.0_unigene60205	1/189
SustainPine v2.0	sp_v2.0_unigene60597	140/189
SustainPine v2.0	sp_v2.0_unigene82561	11/189

Source	Descriptions	Term	Type	Identity
AutoFact	Non-specific lipid-transfer protein n=4 Tax=Pinus RepID=NLTP_PINTA	-	-	95%
FL-Next	sp=Non-specific lipid-transfer protein; Pinus resinosa (Red pine) (Norway pine).	-	-	95%
Blast2go	nonspecific lipid-transfer protein 4 precursor	-	-	80%

Source	InterPros	Term	Type	Identity
Sma3	Plant lipid transfer protein/hydrophobic protein helical domain	IPR013770	-	-
Sma3		IPR003612	-	-
Sma3	Plant lipid transfer protein/Par allergen	IPR000528	-	-

Full-Lengther Next Prediction

SNPs (tot: 7)

Position	A %	C %	G %	T %	Probability
574		4		95	0.995482
809	90		10		1.0
820	2	89			1.0
821	40	15	2		1.0
822		88		2	1.0
824	5	95			0.997749
825	10	87		2	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain