SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene5844

Length: 358 nt

UniGene Fasta

>biog2_v2.0_unigene5844
AATGGGGATTGAGCGGCGAGTAACGTAAGCACAGAGGAGAACGACGAGATTACTAACGGCTCCGCGTCTGCATCGTAGCGATGACAAAACGTACTAAGAAGGCTGGTATTGTTGGCAAATATGGTACCAGGTATGGTGCCAGTTTAAGAAAACAGATCAAAAAATGGAAGTGAGCCAGCATTCCAAGTTTTTCTGTGAATTCTGTGGCAAGTTTGCAGTGAAGAGAAAAGCAGTTGGCATTTGGGGATGCAAGGATTGTGGGAAAGTGAAGGCAGGTGGTGCCTATACATTGAATACTCCAAGTGCTGTAACAGTGCGCAGTACTATTCGGAGGTTGAGGGAGCAGACAGAAGGATGA

Ace file of the UniGene biog2_v2.0_unigene5844

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene15640	13/13

Source	Descriptions	Term	Type	e value	Identity
AutoFact	60S ribosomal protein L37a, putative n=2 Tax=fabids RepID=B9RUR2_RICCO	-	-	2.94273e-44	97%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	51%
Blast2go	60s ribosomal protein l37a	-	-	0.0	97%

Source	GOs	Term	Type	e value	Identity
Blast2go	intracellular part	GO:0044424	Cellular Component	0.0	97%

Source	InterPros	Term	Type	e value	Identity
Sma3	Ribosomal protein L37ae	IPR002674	-	0.0	-
Sma3	Ribosomal protein L37ae/L37e, N-terminal	IPR011331	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NT67

Fln msg: Overlapping hits, possible frame ERROR between 266 and 146,

Fln protein: MTKRTKKAGIVGKYGTRYGASxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxKAGGAYTLNTPSAVTVRSTIRRLREQTEG*

Protein Length: 94

Fln nts: AATGGGGATTGAGCGGCGAGTAACGTAAGCACAGAGGAGAACGACGAGATTACTAACGGCTCCGCGTCTGCATCGTAGCG_-_ATGACAAAACGTACTAAGAAGGCTGGTATTGTTGGCAAATATGGTACCAGGTATGGTGCCAGTxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxAAGGCAGGTGGTGCCTATACATTGAATACTCCAAGTGCTGTAACAGTGCGCAGTACTATTCGGAGGTTGAGGGAGCAGACAGAAGGATGA___

Fln Alignment:

Contig5844___MTKRTKKAGIVGKYGTRYGASLxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxVKAGGAYTLNTPSAVTVRSTIRRLREQTEG
A9NT67_________________MTKRTKKAGIVGKYGTRYGASLxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxVKAGGAYTLNTPSAVTVRSTIRRLREQTEG

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain