SustainPineDB

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene5829

Length: 1140 nt

UniGene Fasta

Ace file of the UniGene biog2_v2.0_unigene5829

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene17260	19/19

Source	Descriptions	Term	Type	Identity
AutoFact	RNA recognition motif-containing protein [Arabidopsis thaliana] ref\|NP_974317.1\| RNA recognition motif-containing protein [Arabidopsis thaliana] dbj\|BAA97064.1\| unnamed protein product [Arabidopsis thaliana] gb\|AAL36202.1\| putative RNA-binding protein [Ar	-	-	46%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	91%
Blast2go	protein	-	-	69%

Source	InterPros	Term	Type	e value	Identity
Sma3	Nucleotide-binding, alpha-beta plait	IPR012677	-	0.0	-
Sma3	RNA recognition motif domain	IPR000504	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NUP9

Fln msg:

Fln protein: MEVKGDGKKRKLDEEANGAALQLSKDDLHSLLEPLSKEQLISLLVNAGSSYPAIAEEIKDVASKDPAHRKLFVRGLAWETSSQTLCDAFEQYGEIEEGAVIMDKTSGKSRGFGFVTFKHMDSAQRALKEPSKTIDGRITVSNLAVASTGPGQTADQAQRKLYIGGLSYDTANDKLLEVFSKYGEIEEGSVAYDKNTNKSRGFAFVTFKTVEATKRALKEPNKTIDGRTVTVKLAADGQKEKLSSQPAVSPQMQTAYGTDYPSLNSYHRPGPQVPASAPPPIGFSAYPSGLSAYASQPPYATQPTYGGISSASQYGVLSSTTPYSSNQYAKYATSLQDPRLVPSGLHTTGGGAGPGPGYPYYGSTGTGF*

Protein Length: 370

Fln nts: AGAAACCTCTCTTCTCAAACCGGAGAAAAAATC_-_ATGGAGGTCAAGGGCGATGGTAAGAAGAGAAAGCTGGACGAGGAAGCCAATGGCGCCGCTCTGCAACTCTCGAAGGACGATCTGCACTCGCTGTTGGAGCCACTAAGCAAAGAGCAGTTGATCTCTTTGCTGGTCAATGCAGGTTCTTCATACCCTGCAATTGCAGAAGAAATTAAAGATGTTGCAAGCAAGGACCCTGCTCATCGGAAGCTGTTTGTGCGTGGATTGGCTTGGGAGACTTCTTCACAGACCCTATGTGATGCATTTGAACAGTATGGGGAGATTGAAGAAGGTGCCGTTATTATGGATAAGACATCAGGAAAGTCACGAGGATTTGGCTTTGTCACATTTAAGCATATGGATTCTGCTCAAAGGGCATTGAAGGAGCCTAGCAAGACTATTGATGGGAGGATTACTGTAAGCAATCTGGCAGTGGCGAGCACAGGTCCTGGTCAAACTGCAGATCAGGCTCAAAGGAAACTTTACATTGGTGGTCTTTCATATGACACGGCCAATGATAAGCTTCTAGAAGTTTTTTCCAAATATGGAGAGATAGAAGAAGGTTCAGTTGCATATGATAAGAATACCAACAAATCCAGGGGATTTGCATTTGTGACCTTCAAGACTGTGGAGGCTACAAAGCGGGCTCTTAAGGAACCAAACAAAACCATTGATGGAAGGACTGTTACTGTGAAACTTGCAGCTGATGGTCAGAAGGAGAAGCTATCATCGCAACCTGCAGTATCTCCACAAATGCAGACAGCTTATGGAACAGACTATCCGAGCTTGAACTCATATCATAGGCCAGGGCCACAGGTACCAGCCTCTGCACCACCACCAATTGGTTTCTCAGCATATCCGTCTGGCCTTTCAGCATATGCATCTCAGCCTCCATATGCAACACAACCTACATACGGAGGAATTTCATCTGCTTCTCAATATGGTGTTCTAAGCTCCACAACACCATACAGCTCAAACCAGTATGCAAAATATGCAACATCCCTCCAAGATCCACGACTGGTTCCATCAGGATTGCACACAACAGGTGGTGGAGCAGGTCCTGGTCCAGGCTACCCATACTATGGTTCAACTGGAACTGGCTTTTAA___

Fln Alignment:

Contig5829___MEVKGDGKKRKLDEEANGAALQLSKDDLHSLLEPLSKEQLISLLVNAGSSYPAIAEEIKDVASKDPAHRKLFVRGLAWETSSQTLCDAFEQYGEIEEGAVIMDKTSGKSRGFGFVTFKHMDSAQRALKEPSKTIDGRITVSNLAVASTGPGQTADQAQRKLYIGGLSYDTANDKLLEVFSKYGEIEEGSVAYDKNTNKSRGFAFVTFKTVEATKRALKEPNKTIDGRTVTVKLAADGQKEKLSSQPAVSPQM------QTAYGTDYPSLNSYHRXXXXXXXXXXXXIGFSAYPSGLSAYASQ-PPYATQPTYGGISSASQYGVLSSTTPYSSNQYAKYATSLQDPRLVPSGLH
A9NUP9_________________MEHKGDGKKRKLDEEANGAALQLSKDHLHSLLEPLSKEQLISLLVDAGSSYPAIAEEIKDVASKDPAHRKLFVRGLAWETSSQTLCDAFEQYGEIEEGAVIMDKASGKSRGFGFVTFKHMDSAQKALKEPSKTIDGRITVSNLAVASTGPGQSADQAQRKLYIGGLSYDTANDKLLEVFSKYGEIEEGSVAYDKNTNKSRGFAFVTFKTVEATKRALKEPNKTIDGRTVTVKLAADGQKEKPQSQPAVSPQMQPIPQLQTAYGTEYPSLNSYHRPGPQ----------VPAYPSGLTAYASQPPPYPTQPTYAGISSASQYGVLSSTTPYSSNQYAKYATSLQDPRLVPSGLH

SNPs (tot: 15)

Position	A %	C %	G %	T %	Probability
230		87	12		0.992554
231		87	12		0.992554
232		87	12		0.992554
810		85		14	0.993533
811	85		14		0.993533
813	85		14		0.993533
883		25		62	1.0
886	11	88			0.923564
888		88	11		0.923564
889	77	11	11		0.968132
938	90			10	0.90298
939		90	10		0.90298
940	90		10		0.90298
941		90	10		0.90298
945		90		10	0.90298

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain