SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene5812

Length: 203 nt

UniGene Fasta

>biog2_v2.0_unigene5812
AAATACTTCTGTTGACAAGCCTGAGGAGGCAACATTGATTGAAATGCAGGAGCCTGTGTCATTAACATTTGCTCTACGATATATGAACTCATTTACAAAGGCATCGCCTCTATCTAACATAGTGACGATAAGCATGTCATCCGATCTGCCTGTTGTTGTTGAATACAAAATTGCAGATATGGGATACGTTCGGTATTATTTGG

Ace file of the UniGene biog2_v2.0_unigene5812

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene7156	4/4

Source	Descriptions	Term	Type	Identity
AutoFact	Proliferating cell nuclear antigen n=16 Tax=Spermatophyta RepID=PCNA_CATRO	-	-	87%
FL-Next	sp=Proliferating cell nuclear antigen; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	88%
Blast2go	proliferating cell nuclear antigen	-	-	96%

Source	GOs	Term	Type	Identity
Blast2go	regulation of DNA replication	GO:0006275	Biological Process	96%
Blast2go	DNA polymerase processivity factor activity	GO:0030337	Molecular Function	96%
Blast2go	DNA binding	GO:0003677	Molecular Function	96%
Blast2go	PCNA complex	GO:0043626	Cellular Component	96%
Blast2go	nucleus	GO:0005634	Cellular Component	96%

Source	InterPros	Term	Type	e value	Identity
Sma3	Proliferating cell nuclear antigen, PCNA	IPR000730	-	0.0	-

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9P175

Fln msg: STOP codon was not found. Distance to subject end: 10 aas, your sequence is shorter than subject: 67 - 261

Fln protein: NTSVDKPEEATLIEMQEPVSLTFALRYMNSFTKASPLSNIVTISMSSDLPVVVEYKIADMGYVRYYL

Protein Length: 68

Fln nts: AAATACTTCTGTTGACAAGCCTGAGGAGGCAACATTGATTGAAATGCAGGAGCCTGTGTCATTAACATTTGCTCTACGATATATGAACTCATTTACAAAGGCATCGCCTCTATCTAACATAGTGACGATAAGCATGTCATCCGATCTGCCTGTTGTTGTTGAATACAAAATTGCAGATATGGGATACGTTCGGTATTATTTGG

Fln Alignment:

Contig5812___NTSVDKPEEATLIEMQEPVSLTFALRYMNSFTKASPLSNIVTISMSSDLPVVVEYKIADMGYVRYYL
A9P175_________________NPSVDKPDEATIIEMQEPVSLTFALRYMNSFTKATPLSNTVTISMSSELPVVVEYKIADMGYIRFYL

SNPs (tot: 4)

Position	A %	C %	G %	T %	Probability
158	25			75	0.996473
161			25	75	0.996473
162			25	75	0.996473
165	75	25			0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain