SustainPineDB

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene5809

Length: 1519 nt

UniGene Fasta

Ace file of the UniGene biog2_v2.0_unigene5809

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene19716	61/66
SustainPine v2.0	sp_v2.0_unigene61189	5/66

Source	Descriptions	Term	Type	Identity
AutoFact	Proteasome subunit beta type n=2 Tax=Picea sitchensis RepID=A9NKT0_PICSI	-	-	91%
FL-Next	sp=Proteasome subunit beta type; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	96%
Blast2go	20s proteasome beta subunit pbg1	-	-	89%

Source	GOs	Term	Type	Identity
Blast2go	response to cadmium ion	GO:0046686	Biological Process	89%
Blast2go	response to salt stress	GO:0009651	Biological Process	89%
Blast2go	peptidase activity	GO:0008233	Molecular Function	89%
Blast2go	cytosolic ribosome	GO:0022626	Cellular Component	89%
Blast2go	proteasome complex	GO:0000502	Cellular Component	89%

Source	InterPros	Term	Type	Identity
Sma3	Proteasome, subunit alpha/beta	IPR001353	-	-
Sma3	Proteasome, beta-type subunit, conserved site	IPR016050	-	-
Sma3	Proteasome endopeptidase complex, beta subunit	IPR016295	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NKT0

Fln msg:

Fln protein: MLAAGRKDEKNEQALKNHVGHPQTGKDCAFTLLGSPITHTQYPYVTGTSVLGIKYKDGVLLASDMGGSYGSTLRYKSVQRLKPIGKHTLLGAGGEISDFQEIIRYLDELILYDNMWDDGNSLGPKEVHNYLNRLMYNRRNKFNPLWNTLVLGGVKNGQKYLGTVNMIGVHYEENHVATGFGNHLARPIFRDEWHEDMTFEEGVKLLEKCMLVLLYRDRSAVNKLQIAKITEEGATISEPYAMKTHWELEAFKNPATGAVGSW*

Protein Length: 264

Fln nts: ATGGGGCTTGGCGGAAGAGCAACGTGCGTTACTACAGTTCTGAGTTATCGATCTGAGTTTTGAGTTTTGGGCAGCAACCATTCTGGATACAGTTGTTTGAGCTCTCTTAATAGAGTTGTAAAG_-_ATGTTGGCAGCGGGTCGGAAGGATGAAAAGAATGAGCAGGCTCTGAAAAATCACGTGGGTCATCCGCAAACAGGCAAAGATTGCGCATTTACACTTCTCGGCTCTCCTATCACTCATACCCAGTATCCATATGTAACTGGTACATCAGTCTTGGGTATTAAGTATAAAGATGGAGTTTTGCTGGCATCAGACATGGGAGGATCGTATGGATCTACCTTACGTTACAAGAGTGTCCAGAGATTGAAGCCTATTGGTAAACACACTCTCTTGGGTGCTGGTGGAGAAATAAGTGATTTCCAGGAGATAATACGTTATCTTGATGAACTCATACTTTATGACAACATGTGGGATGATGGCAACTCCTTGGGTCCTAAAGAAGTACACAACTATCTCAATCGGTTGATGTACAACAGGCGAAATAAATTCAATCCTTTGTGGAACACACTTGTTCTGGGTGGAGTCAAGAATGGTCAGAAATACCTGGGCACGGTCAATATGATAGGGGTGCATTATGAGGAGAACCATGTGGCTACTGGATTTGGTAATCATCTTGCTAGGCCAATTTTCCGTGATGAATGGCACGAGGATATGACCTTTGAAGAAGGTGTCAAGCTTCTGGAAAAGTGCATGCTTGTGCTTTTATATCGTGATCGGTCAGCTGTTAACAAACTACAGATAGCAAAGATCACAGAAGAAGGAGCCACAATTTCTGAACCATATGCTATGAAAACACATTGGGAACTTGAGGCATTCAAGAATCCAGCTACAGGAGCTGTAGGTTCGTGGTAA___TGAGAAACAGTGGTTTTGCAGTTGTCTCAATTGCCGAGACTAAATGAAGATTTCAATATACTTCAAATATGAATGGCCAGGCTGAAATCCGAGTTCTTACTCATTTTTAAGTATCAAACACAGGCCCCTTTAGTTATCCTGGAGTCGGATGTTGAAGCAAATATGAGTTAGCTGCATTTCAATTTATTTATGTTGAAGGACATCATAAAATGATAGAGATTTCGAATGGTCAACTTTGTAATGCTTTTAATAATTATATTTTATTTTCTTGAGTTAAACATGAAGCTTTAAATGCTAATTTTAATAACATTTTCAACGACATAAAAATGGGTTCTTGTTCACTCTGCAGGAATCTATTCACTAGTAGGAACATATATTGAACATTTGCTTTGGTAGGCTCTGTTTTGTTGTTAAACGAGATGTCTCCCTAGCTTAGGCTTTGGGGATGAAACGATTGTAGAATGACATCTATAAGACATAGATGTGTAATGAATCACATTCCACACATGGCATTATGCACTGAATATTTGTTATCAGTAGTAATATGCGCTGAATATTTGAAATTGTGCCTTTAGGACCCGTAACTCTATAGTTCATTTGCGTTAGT

Fln Alignment:

Contig5809___MLAAGRKDEKNEQALKNHVGHPQTGKDCAFTLLGSPITHTQYPYVTGTSVLGIKYKDGVLLASDMGGSYGSTLRYKSVQRLKPIGKHTLLGAGGEISDFQEIIRYLDELILYDNMWDDGNSLGPKEVHXXXXXXXXXXXXKFNPLWNTLVLGGVKNGQKYLGTVNMIGVHYEENHVATGFGNHLARPIFRDEWHEDMTFEEGVKLLEKCMLVLLYRDRSAVNKLQIAKITEEGATISEPYAMKTHWELEAFKNPATGAVGSW
A9NKT0_________________MLAAAQKDEKKDQALKNHVGHPQTGRDCPFTLLNSPISHTQYPYVTGTSVLGIKYKDGVLLASDMGGSYGSTLRYKSVQRLKPIGKHTLLGAGGEISDFQEIVRYLDELILYDNMWDDGNSLGPKEVHNYLNRLMYNRRNKFNPLWNTLVLGGVKNGQKYLGTVNMIGVHYEENHVATGFGNHLARPIFRDEWHEDMTFEEGVKLLEKCMLVLLYRDRSAVNKLQIAKITEEGATISEPYAIKTHWELEAFKNPATGAVGSW

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain