SustainPineDB

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene5728

Length: 1274 nt

UniGene Fasta

Ace file of the UniGene biog2_v2.0_unigene5728

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene15340	37/37

Source	Descriptions	Term	Type	Identity
AutoFact	putative pollen specific LIM domain-containing protein [Solanum lycopersicum]	-	-	78%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	93%
Blast2go	pollen-specific protein	-	-	85%

Source	InterPros	Term	Type	e value	Identity
Sma3	Zinc finger, LIM-type	IPR001781	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NSQ9

Fln msg:

Fln protein: MAFAGTTQKCKACEKTVYLVDQLTADNSVFHKSCFRCHHCNGTLKLSNYSSFEGVLYCKPHFDQLFKRTGSLDKSFEAIPRASRNDKMHENENRTPSRVSALFSGTQDKCVACGKTVYPIEKVAVDGTSYHRPCFKCCHGGCVISPSNYVAHEGRLYCRHHSSQLFREKGNFSQLSKATPTKGVTENSDTDDK*

Protein Length: 195

Fln nts: ATGGGGGGTTATTGGGAAGATTATCAAGCGGGACTGTAGCCGAAGCTTTGAGAGGTTGAAATTCAGACCTTGCTCCCAACTGGTCTGCTGAAACAAAATCCATTATTGAGCTAGGTTTAGAATCGGGTTTGCTGGTCATCTGGGAGAGGCGATCTATTCAGCTTCGCAGGCCCCCGAAG_-_ATGGCGTTCGCCGGCACAACCCAGAAGTGCAAGGCATGTGAAAAGACGGTCTATTTGGTTGATCAATTGACAGCTGATAATTCTGTTTTTCACAAATCCTGTTTCCGCTGCCATCACTGCAATGGAACCTTAAAGCTTAGCAACTATTCGTCATTTGAGGGAGTTCTATATTGCAAACCTCATTTTGACCAGCTGTTTAAGAGAACAGGAAGTTTGGATAAAAGTTTTGAAGCCATTCCTAGAGCATCAAGAAATGACAAGATGCATGAGAATGAGAACAGGACACCTAGTAGGGTATCAGCATTGTTTTCCGGTACACAGGATAAATGTGTTGCATGTGGGAAGACAGTGTACCCCATTGAGAAGGTTGCTGTTGATGGTACATCATACCACCGACCTTGCTTCAAGTGCTGTCATGGTGGTTGTGTCATCAGCCCCTCAAATTATGTTGCTCATGAAGGCAGGCTATATTGTAGGCATCATAGCTCTCAACTTTTTAGGGAGAAAGGTAACTTCAGCCAGCTTTCAAAGGCAACACCTACAAAAGGGGTGACTGAGAACTCAGACACAGACGACAAGTGA___TCATTCGGGCCAGATTTTTGTTGAGAGAGTTGTAGTGTGTAATTGATTCATTTCATACATTTGATATGCAAGCCTGTACAATAGCCTGTGACTGTTAAGGGCATTCTTTTGTCTCCCTGTTGCTATTTGGGTTTCCGGTGTGTTCATTTTCACTTATTTTTGTGTTTTAGCTGGAGGAATTTGAGAGGGTAGAATTGTGTCATCGCTATGGCTTGTGCATGACTCATAAGCCAGCAGTTGAGACTTTTATTTATTAGTTATAGTACTATATCTTGTCGAGTTCTCAATAAAAGATAGTGTTATGCTGTTGGGCAGCATCCTAGAGTGTTTTGTAATGTAGGCATAATAGTCTCAATGTTTCTATAAGGTATTTGCCAATGTTTGTTGCAACATGTTTTGAGTTTTAGTTGCAAAAGATAGTGTTATGCTGTTGAACAGCATCCTAGAGTGCTTTGTAATGTAAACATAATAATCTCGATGTTTCTATAATAAGGTATTTTCCAATTTTGCTTG

Fln Alignment:

Contig5728___MAFAGTTQKCKACEKTVYLVDQLTADNSVFHKSCFRCHHCNGTLKLSNYSSFEGVLYCKPHFDQLFKRTGSLDKSFEAIPRASRNDKMHENENRTPSRVSALFSGTQDKCVACGKTVYPIEKVAVDGTSYHRPCFKCCHGGCVISPSNYVAHEGRLYCRHHSSQLFREKGNFSQLSKATPTKGVTENSDTDDK
A9NSQ9_________________MAFAGTTQKCKACEKTVYLVDQLTADNSVYHKSCFRCHHCNGTLKLSNYSSFEGVLYCKPHFDQLFKRTGSLDKSFEAIPRASRNDKTQENESKTPNRVSTMFSGTQDKCVACGKTVYPIEKVAVDGTSYHRPCFKCCHGGCVISPSNYVAHEGRLYCRHHSSQLFREKGNFSQLAKGTPTKGVTEN--TDDK

SNPs (tot: 12)

Position	A %	C %	G %	T %	Probability
12		33		66	0.997452
13			33	33	0.997753
14		33	66		0.997452
16		33	66		0.997452
46	33	66			1.0
49			25	75	1.0
50			37	62	1.0
52	75		25		1.0
1078		75		25	0.996473
1079	75	25			0.996473
1156	33	66			0.997452
1157	33	33			0.997753

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain