SustainPineDB

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene5707

Length: 1178 nt

UniGene Fasta

Ace file of the UniGene biog2_v2.0_unigene5707

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene15302	44/44

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Putative histone H1 n=2 Tax=Pinaceae RepID=Q84L42_PINPS	-	-	1.0e-35	68%
FL-Next	tr=Putative histone H1; Pinus pinaster (Maritime pine).	-	-	0.0	100%
Blast2go	histone h1	-	-	1.06569e-41	82%

Source	InterPros	Term	Type	Identity
Sma3	Histone H1/H5	IPR005818	-	-
Sma3	Histone H5	IPR005819	-	-
Sma3	Winged helix-turn-helix transcription repressor DNA-binding	IPR011991	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: Q84L42

Fln msg: Separated hits, possible frame ERROR between 203 and 238,

Fln protein: MASTDPPADTVPAEPVANExxxxxxxxxxxxxRRRKGENPKGKEAEGCQGF*TPACTSPYFQMISEAIVALKERGGSSPYAIAKFLSEKYKSDLPPVFKKKLNVQLRNLTNSGKLTKVKGSYKLAEKEKKADAPKPKTEKKPAAKKPKAPAAKAPAKAPSKASKPAAPKKAEKPVAPKKAAVPKKAAKPAAPKAAAPKAKKPAAAAKPAAPKRSSTRTAAKPAAPKAAKKPTPKKAGGAAKKAKK*

Protein Length: 247

Fln nts: ACTATGGGATCAAATCCCATTCCGCCATTTTCAGGTTGCTGAATTTAGCAGTCCTGCGATTGAATTCGGTTTCGGATAGTAGAGCTGGATAAATTTTGCGCCGTGAAGTCGAGCTTCTGTGCTCTGTAATTCGGTACTAATCC_-_ATGGCTTCCACTGATCCTCCTGCGGATACCGTCCCTGCCGAGCCCGTGGCGAATGAAGAxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxCCGAAGGAGAAAAGGTGAAAACCCCAAAGGAAAAGAAGCCGAAGGCTGCCAAGGGTTCTAAACCCCCGCCTGCACATCCCCTTATTTCCAGATGATTTCTGAAGCCATAGTGGCTCTGAAAGAGCGCGGCGGTTCTAGCCCTTATGCGATAGCGAAGTTCTTGAGCGAAAAGTATAAATCTGATCTGCCCCCTGTGTTCAAGAAGAAACTCAATGTACAGCTCCGGAATTTGACAAATTCCGGCAAGCTAACCAAAGTGAAAGGCTCTTATAAGCTTGCCGAGAAAGAAAAAAAGGCCGACGCGCCCAAGCCAAAGACAGAAAAGAAACCTGCAGCCAAGAAGCCTAAAGCACCTGCTGCCAAGGCTCCAGCAAAGGCCCCTTCCAAGGCGTCTAAGCCCGCGGCACCTAAGAAGGCCGAGAAGCCTGTGGCTCCAAAGAAAGCGGCGGTTCCGAAGAAGGCTGCGAAGCCCGCGGCTCCAAAGGCGGCGGCTCCCAAAGCCAAGAAACCGGCTGCCGCCGCTAAGCCTGCTGCTCCGAAAAGGTCTTCTACAAGAACGGCTGCCAAGCCCGCAGCTCCCAAGGCCGCGAAGAAGCCTACACCCAAGAAAGCCGGGGGGGCTGCAAAGAAAGCCAAGAAGTGA___GGATTTTTTCTTTGAATCTGGGCGTGTACACTATAATTATTATCATTATGTCAGTTTACAGATTGAAATGCCTGTTTTTGTCATAGTCGATGGGGTATTTTGGTGTTAAGCCCTTCTCCATTATCTGGATATTCTATGTCACTGAACTCTACTCTCAGCTGTTACAAGCAAAATGTTCAGGAATGAACTCATTTGCTTGTAACGTCCGACTGTAACTTTCTTTTTAATTTCATTTCTGGATCATTTGAAAATTGTACGTCGTTTCTCGCGATATATAAAAATTCAGATCCTCATTCACC

Fln Alignment:

Contig5707___MASTDPPADTVPAEPVANEDxxxxxxxxxxxxRRRKGENPKGKEAEGCQGF*TPACTSPYFQMISEAIVALKERGGSSPYAIAKFLSEKYKSDLPPVFKKKLNVQLRNLTNSGKLTKVKGSYKL
Q84L42_________________MASTDPPADTVPAEPVANEDxxxxxxxxxxxxKEKKVKTPKEKKPKAAKGSKPPPAHPPYFQMISEAIVALKERGGSSPYAIAKFLSEKYKSDLPPVFKKKLNVQLRNLTNSGKLTKVKGSYKL

SNPs (tot: 20)

Position	A %	C %	G %	T %	Probability
53	20			80	0.995493
54		80		20	0.995493
55		80	20		0.995493
56			20	80	0.995493
79	80		20		0.995493
82	80			20	0.995493
187	10	90			0.90298
684			33	66	0.997452
689		66		33	0.997452
732		33		66	1.0
816		14		85	0.993533
826	12		87		0.992554
827		87		12	0.992554
829	87		12		0.992554
830	87		12		0.992554
845	87			12	0.992554
847	85		14		0.993533
848	85		14		0.993533
886	40			60	1.0
1049		42		57	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain