SustainPineDB

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene5699

Length: 1159 nt

UniGene Fasta

Ace file of the UniGene biog2_v2.0_unigene5699

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene10066	19/19

Source	Descriptions	Term	Type	Identity
AutoFact	Triacylglycerol lipase 1, putative n=1 Tax=Ricinus communis RepID=B9RY83_RICCO	-	-	39%
FL-Next	sp=Triacylglycerol lipase 2; Arabidopsis thaliana (Mouse-ear cress).	-	-	36%
Blast2go	triacylglycerol lipase 2	-	-	57%

Source	GOs	Term	Type	e value	Identity
Blast2go	defense response to insect	GO:0002213	Biological Process	0.0	57%
Blast2go	lipase activity	GO:0016298	Molecular Function	0.0	57%

Source	InterPros	Term	Type	e value	Identity
Sma3	Alpha/beta hydrolase fold-1	IPR000073	-	0.0	-
Sma3	Partial AB-hydrolase lipase domain	IPR006693	-	0.0	-

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: sp_plants

Fln subject: Q67ZU1

Fln msg: STOP codon was not found. Distance to subject end: 6 aas, your sequence is shorter than subject: 386 - 418

Fln protein: FQFKYFFVRGAQEPGRFCATLVQPYYSRYGCQEYKTTTVDGFRLGVQRIYSRAFPSKSNRKSPIFFNHGILTSGISWVVNPPDQADVSPAFVLADADYDVWIGNARTTSYSYGHEYLTELDKAYWDWSLDELAAFDLPSMMYLVHNITNRKVNLIGHSQGAQCALAALSEGLLVDIVDKVALSAPVAYDSHIFSPTAVAGNVLNVGQLLEDFRIYAFSSKTPITGQQIIDLICLRENVLCINSLTSTFAGINCCLNISRSGMYETSEATSAKNLIHLAQLYRANKFQKYDYGAAENSQRYNSMYPPAYDLSRVPTQNLFLASGGADPLADLRDVEKLKCELRAGYKYVFKPKFAHLDFLYAIDGKEKLYDSVIAFFRARSSRLIAQ

Protein Length: 387

Fln nts: TTTCAATTCAAATACTTCTTTGTCAGGGGAGCGCAGGAGCCAGGCCGTTTCTGCGCCACACTCGTGCAACCTTATTATTCTAGATACGGTTGCCAGGAATACAAGACTACAACTGTAGATGGCTTTCGGCTGGGAGTTCAGAGGATATATTCTCGAGCATTCCCATCTAAATCTAATCGAAAGAGTCCTATTTTCTTTAACCATGGCATTCTAACTAGTGGAATCTCTTGGGTGGTGAATCCCCCTGATCAAGCCGATGTGTCCCCTGCGTTCGTTCTGGCAGATGCAGACTATGATGTTTGGATTGGGAATGCTCGCACCACGAGTTACAGCTATGGCCATGAATATTTGACAGAATTAGATAAGGCATACTGGGATTGGAGCTTGGATGAATTGGCAGCCTTTGACCTTCCCAGCATGATGTACCTAGTGCACAACATTACAAACCGAAAAGTTAATCTCATCGGCCACTCTCAGGGAGCTCAATGCGCCCTGGCTGCTTTGAGTGAAGGGCTTTTAGTGGATATTGTGGACAAAGTGGCATTATCGGCTCCAGTTGCTTATGACTCTCATATCTTTTCGCCGACAGCAGTTGCTGGAAACGTTCTAAACGTGGGCCAGCTACTTGAAGACTTCAGAATCTATGCGTTTAGCTCAAAAACGCCAATAACAGGACAGCAAATTATTGATCTTATATGTCTCAGAGAAAATGTGCTGTGTATTAATAGTCTTACGTCCACTTTTGCAGGAATAAACTGCTGCCTTAACATTTCTAGAAGTGGGATGTATGAGACTTCAGAGGCGACCTCAGCTAAGAACTTAATTCATTTAGCTCAATTGTATAGAGCAAACAAGTTTCAGAAATATGATTATGGAGCTGCAGAGAACAGTCAGAGGTATAATTCCATGTATCCTCCGGCATATGATCTGTCCAGAGTGCCAACCCAAAACTTGTTCCTCGCTTCTGGAGGTGCAGACCCTCTTGCAGACCTACGAGACGTGGAAAAACTGAAGTGTGAGTTGAGAGCGGGATACAAATACGTTTTCAAGCCCAAATTTGCCCATTTGGACTTCCTCTACGCCATTGATGGCAAGGAGAAGCTCTATGATAGCGTCATCGCTTTTTTCAGAGCTAGATCTTCTAGATTGATTGCACAAT

Fln Alignment:

Contig5699___GRFCATLVQPYYSRYGCQEYKTTTVDGFRLGVQRI---YSRAFPSKSNRKSPIFFNHGILTSGISWVVNPPDQADVSPAFVLADADYDVWIGNARTTSYSYGHEYLTELDKAYWDWSLDELAAFDLPSMMYLVHNITNRKVNLIGHSQGAQCALAALSEGLLVDIVDKVALSAPVAYDSHIFSPTAVAGNVLNVGQLLEDFRIYAFSSKTPITG--QQIIDLICLRENVLCINSLTSTFAGINCCLNISRSGMYETSE--ATSAKNLIHLAQLYRANKFQKYDYGAAE-NSQRYNSMYPPAYDLSRVPTQ-NLFLASGGADPLADLRDVEKLKCELR----AGYKYVFKPKFAHLDFLYAIDGKEKLYDSVIAFFRARS
Q67ZU1_________________GGICASSVHIF--GYKCEEHDVVTQDGYILNMQRIPEGRAGAVAGDGGKRQPVLIQHGILVDGMSWLLNPADQ---NLPLILADQGFDVWMGNTRGTRFSRRHKYLNPSQRAFWNWTWDELVSYDLPAMFDHIHGLTGQKIHYLGHSLGTLIGFASFSEKGLVDQVRSAAMLSPVAYLSHM---TTVIGDIAAKTFLAEATSILGWPEFNPKSGLVGDFIKAICLKAGIDCYD-LVSVITGKNCCLNASTIDLFLANEPQSTSTKNMIHLAQTVRDKELRKYNYGSSDRNIKHYGQAIPPAYNISAIPHELPLFFSYGGLDSLADVKDVEFLLDQFKYHDIDKMNVQFVKDYAHADFIMGVTAKDVVYNQVATFFKRQA

SNPs (tot: 18)

Position	A %	C %	G %	T %	Probability
274	11		88		0.923564
290	44		55		1.0
335	88			11	0.923564
348		12		87	0.992554
368	12	87			0.992554
378		12		87	0.992554
412	12	87			0.992554
447		66		33	0.997452
666	77		22		0.999999
672	88	11			0.923564
714	11		88		0.923564
735		25	75		1.0
771	12			87	0.992554
773		87	12		0.992554
774			12	87	0.992554
775	87		12		0.992554
892		85		14	0.993533
942	75	25			0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain