SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene5648

Length: 628 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog2_v2.0_unigene5648 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene11340	9/11
SustainPine v2.0	sp_v2.0_unigene63821	2/11

Source	Descriptions	Term	Type	Identity
AutoFact	4-methyl-5(b-hydroxyethyl)-thiazole monophosphate biosynthesis [Arabidopsis thaliana] gb\|AAF69547.1\|AC008007_22 F12M16.18 [Arabidopsis thaliana] gb\|AAL07117.1\| unknown protein [Arabidopsis thaliana] gb\|AAM14123.1\| unknown protein [Arabidopsis thaliana] gb	-	-	57%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	92%
Blast2go	4-methyl-5(b-hydroxyethyl)-thiazol monophosphate biosynthesis enzyme	-	-	78%

Source	GOs	Term	Type	e value	Identity
Blast2go	chloroplast	GO:0009507	Cellular Component	0.0	78%

Source	InterPros	Term	Type	Identity
Sma3	Armadillo	IPR000225	-	-
Sma3	ThiJ/PfpI	IPR002818	-	-
Sma3	DJ-1	IPR006287	-	-
Sma3	TonB box, conserved site	IPR010916	-	-
Sma3	Armadillo-like helical	IPR011989	-	-

Full-Lengther Next Prediction

SNPs (tot: 10)

Position	A %	C %	G %	T %	Probability
343		14		85	0.993533
344	85	14			0.993533
348		85		14	0.993533
395			83	16	0.994512
429		30		70	1.0
432		10		90	0.90298
434		90		10	0.90298
451		10		90	0.90298
452		10	90		0.90298
458	11	88			0.923564

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain