SustainPineDB

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene5597

Length: 1002 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog2_v2.0_unigene5597 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene24092	19/19

Source	Descriptions	Term	Type	Identity
AutoFact	porin-like protein [Brassica napus]	-	-	51%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	92%
Blast2go	porin voltage-dependent anion-selective channel protein	-	-	77%

Source	InterPros	Term	Type	e value	Identity
Sma3	Porin, eukaryotic type	IPR001925	-	0.0	-
Sma3	Domain of unknown function DUF221	IPR003864	-	0.0	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: D5AEE9

Fln msg: Distance to subject end: 17 aas, your sequence is shorter than subject: 258 - 276

Fln protein: MGKGPGLFSNIGKKARDLLTKDYSYDQKFAVATYSDDGLGITSTGMNKGGLFCGDIATLYKYQKSTIDVKVDTNSNISTTITIDEVIPGAKTVFSFKLPDDKSGKLEVQYLHEHVGLSSSIGLTPKPVVDFSTAIGSDVFTVGGEVGFDTSSGLFTKYNAGIGITKPEFSAAVIFADKGDTLKASYLHELNPITKTCFAAEISRKFSANQNTFTVGSSYALDPLTTMKTRLNNHGKLGTVLQHEWKPKSLITLSSEFD

Protein Length: 259

Fln nts: ATGGGGGCCCACGTTTGACCCGCTTTAATCGTAGATTTGCAGTGACCTAATTATCGGTCTCGCTATTTCTGTTTCTTTCCTTCAATTGTTTGGGACTGCATTGTATCGCCAGGTCGCGAGATCGACCCTCGGTGGAGCTGAACTGGCCGGCCAGTAACACTTGCAGCCAGACGCTCCATTGAATCTTCCCCCCCTCGAGCACGAGCTATTGCGATCTATCGGAAAG_-_ATGGGCAAGGGACCTGGATTGTTTTCCAACATCGGGAAGAAGGCCAGAGATCTTCTCACGAAGGATTACAGCTATGACCAGAAGTTTGCTGTGGCTACATACAGTGATGATGGGTTGGGTATTACATCAACTGGCATGAACAAAGGAGGGCTTTTCTGTGGTGACATCGCTACACTCTACAAGTATCAGAAGTCAACCATCGACGTTAAAGTGGACACAAATTCCAATATTTCAACTACAATCACCATTGATGAAGTCATACCAGGTGCCAAGACTGTTTTTAGCTTCAAATTGCCAGACGATAAATCTGGCAAGTTGGAGGTTCAATACTTGCATGAACACGTGGGCTTGAGCTCAAGCATTGGTTTGACTCCCAAGCCTGTAGTTGACTTTTCTACGGCAATAGGAAGCGACGTATTTACTGTTGGTGGTGAAGTAGGCTTTGACACTTCATCAGGATTGTTCACGAAGTACAATGCAGGCATTGGCATTACAAAGCCTGAATTCAGTGCCGCTGTTATATTCGCTGACAAGGGAGACACTTTGAAAGCTTCATATCTCCATGAACTGAATCCCATTACAAAAACTTGTTTTGCTGCTGAGATTTCACGCAAGTTTTCAGCAAATCAAAACACTTTCACAGTGGGAAGTTCTTATGCCCTTGACCCCCTCACCACCATGAAAACACGGCTCAACAACCACGGGAAGCTTGGCACAGTTCTCCAGCATGAATGGAAGCCTAAATCCTTGATAACTCTTTCTTCAGAGTTTGACAC

Fln Alignment:

Contig5597___MGKGPGLFSNIGKKARDLLTKDYSYDQKFAVATYSDDGLGITSTGMNKGGLFCGDIATLYKYQKSTIDVKVDXXXXXXXXXXIDEVIPGAKTVFSFKLPDDKSGKLEVQYLHEHVGLSSSIGLTPKPVVDFSTAIGSDVFTVGGEVGFDTSSGLFTKYNAGIGITKPEFSAAVIFADKGDTLKASYLHELNPITKTCFAAEISRKFSANQNTFTVGSSYALDPLTTMKTRLNNHGKLGTVLQHEWKPKSLITLSSEFD
D5AEE9_________________MGKGPGLFSNIGKKARDLLTKDYSHDQKFAVTTYSEDGLGITSTGMNKGGLFCGDIDTHYKYQNSTINVKVDTNSNISTTITIDEVLPGAKTVLSFKLPDEKSGKLDFQYSHEHVGLSSSVGLTPKPQVDFSGAIGSDVFTVGGEVGFDTSSGLFTKYNGGIGITKPEFSAAILFADKGDTLKASYLHELNPITKTCFAAEISRKFSANQNTFTVGSSYALDPLTTMKTRLNNHGKLGTVLQHEWKPKSLITLSSEFD

SNPs (tot: 11)

Position	A %	C %	G %	T %	Probability
322		20		80	0.995493
323		20	80		0.995493
391	50		50		1.0
421		16		83	0.994512
543		11		88	0.923564
631		14		85	0.993533
634	14			85	0.993533
910		60	40		1.0
912		60	40		1.0
913	40	60			1.0
915	40			60	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain