SustainPineDB

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene5568

Length: 1326 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog2_v2.0_unigene5568 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene18359	22/22

Source	Descriptions	Term	Type	Identity
AutoFact	Dihydroflavonol 4-reductase (Fragment) n=1 Tax=Populus trichocarpa RepID=B9H4D5_POPTR	-	-	63%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	76%
Blast2go	dihydroflavonol 4-reductase	-	-	81%

Source	InterPros	Term	Type	Identity
Sma3	NAD-dependent epimerase/dehydratase	IPR001509	-	-
Sma3	NmrA-like	IPR008030	-	-
Sma3	NAD(P)-binding domain	IPR016040	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: C0PQE0

Fln msg:

Fln protein: MGVSVWTRSFKILEMVLGEDNAQRPLQPPSIHELHRESTVCVTGAAGFIGSWLVMRLLERGYTVRATVRDTGDPVKTKHLLELPGANERLILYKADMDEEGSFDAAIDGCEGVFHLATRTVFESRDPENEVIRPAVNGLLNVMRSCAKAKSVKRVVFTSSVGAMKFTDDYGTPGKIYDETCWTNVELCTRLKITGWIYFASKTLAERAAWEFAEKNNIDLISIIPPLVVGPFISQTMPPSMKTALALLTRNEPHYAILRQAHLVHLDDLCVSHIFLYEHPEAKGRYISSSDETTIVQLAKMLAEKYPEYNIPTEFKDVDESLQAVPFSTKKLLDLGFKFKYTKEEMFDGAIRCCREKGLLQ*

Protein Length: 363

Fln nts: ATGGAGAGGCTAACATGGG_-_ATGGGAGTGTCTGTTTGGACACGCTCGTTCAAGATTCTGGAGATGGTTTTAGGTGAGGACAATGCCCAGCGGCCACTACAGCCGCCATCTATTCACGAGCTCCATCGAGAAAGTACAGTATGTGTCACTGGGGCGGCAGGGTTCATAGGATCATGGCTCGTTATGCGTTTGCTTGAGCGAGGATACACTGTTAGAGCCACAGTCCGTGACACAGGAGATCCAGTAAAGACAAAGCATCTGTTGGAGCTGCCCGGGGCAAATGAGAGACTGATACTTTACAAAGCAGATATGGACGAAGAAGGAAGCTTTGACGCCGCCATTGATGGGTGTGAGGGGGTCTTTCATCTAGCCACTCGTACGGTTTTCGAGTCGAGGGACCCGGAGAACGAGGTAATTAGGCCAGCCGTCAATGGGCTCTTGAACGTTATGAGATCCTGTGCAAAAGCTAAGTCTGTGAAGCGAGTTGTTTTCACTTCATCAGTTGGGGCTATGAAATTTACTGATGACTATGGCACTCCGGGGAAAATTTATGATGAAACATGCTGGACAAATGTGGAGCTTTGTACACGCTTAAAGATAACTGGCTGGATATACTTTGCATCCAAAACATTAGCAGAAAGAGCTGCTTGGGAATTTGCAGAGAAGAATAACATAGATCTCATCAGTATCATTCCCCCATTAGTTGTTGGTCCGTTCATCTCGCAGACGATGCCTCCAAGCATGAAAACAGCTCTTGCACTGTTAACAAGGAATGAGCCTCACTACGCAATACTAAGACAGGCCCATCTCGTTCACCTGGACGATCTTTGTGTATCTCATATTTTTCTTTATGAACATCCTGAAGCCAAGGGAAGATACATCTCTTCTTCAGATGAAACCACTATTGTCCAACTGGCCAAAATGCTGGCTGAGAAATATCCAGAATACAATATACCAACCGAGTTCAAGGATGTGGATGAATCCTTGCAGGCTGTGCCATTTTCAACAAAGAAGCTCCTAGACTTGGGCTTCAAGTTCAAGTACACAAAGGAAGAGATGTTTGATGGGGCCATTCGGTGCTGCAGAGAGAAAGGATTGCTGCAGTGA___GAAACGACTGAGACTGAACTCTCAAGTAGCAACGAGTATGGAAGATGAAAAACCAAATTGTAGAACGTGTTATTTAGGGCTTGCATTGCCATACCATGTTATTGATTCCAGTGCACTTGTGTATGTATTTACGATATTTCTAATGCCATGAGACACCACAAGGTAGCTTGAGTGGCCATCTATGTGTATTACAGCTTCAAAGCATAAAGGCTCGTTATACA

Fln Alignment:

Contig5568___MVLGEDNAQRPLQPPSIHELHRESTVCVTGAAGFIGSWLVMRLLERGYTVRATVRDTGDPVKTKHLLELPGANERLILYKADMDEEGSFDAAIDGCEGVFHLATRTVFESRDPENEVIRPAVNGLLNVMRSCAKAKSVKRVVFTSSVGAMKFTDDYGTPGKIYDETCWTNVELCTRLKITGWIYFASKTLAERAAWEFAEKNNIDLISIIPPLVVGPFISQTMPPSMKTALALLTRNEPHYAILRQAHLVHLDDLCVSHIFLYEHPEAKGRYISSSDETTIVQLAKMLAEKYPEYNIPTEFKDVDESLQAVPFSTKKLLDLGFKFKYTKEEMFDGAIRCCREKG
C0PQE0_________________MAFGEEKTPLPQETPLNPQLHR-GTVCVTGAAGFIGSWLIMRLLERGYTVRATVRDTGKPLKTKHLLDLPGANERLTLWKADLDDEGSFDAAVDGCEGVFHVATPMDFESEDPENDIIKPTVNGVLNVMKSCAKAKSVKRVVFTSSAGTVNFTDDFQTPGKVFDESCWTNVDLCRKVKMTGWMYFVSKTLAEKAAWDFAEENKIDLLTVIPTLVVGPFIMQTMPPSMITALALLTRNEPHYMILRQVQLVHLDDLCMSHIFVYEHPEAKGRYISSTCDATIVQVAKMLAQKYPEYNVPTKFKDADESLPAVPFSSKKLLDLGFKFNYTMEEMFDGAIQCCREKG

SNPs (tot: 41)

Position	A %	C %	G %	T %	Probability
189		50	50		1.0
253		50		50	1.0
323		50		50	1.0
351	88		11		0.923564
361		11		88	0.923564
362		11		88	0.923564
363		12	87		0.992554
365	87			12	0.992554
399	85	14			0.993533
404			85	14	0.993533
426	83	16			0.994512
427		16	83		0.994512
428		16		83	0.994512
429	16		83		0.994512
430			83	16	0.994512
542		75		25	0.996473
768			80	20	0.995493
772		20	80		0.995493
774			20	80	0.995493
775		20		80	0.995493
783	50			50	1.0
868			25	75	0.996473
872		75		25	0.996473
912		50		50	1.0
922		20		80	0.995493
924	20		80		0.995493
1130		85		14	0.993533
1132		85		14	0.993533
1134		85	14		0.993533
1138	85		14		0.993533
1139			85	14	0.993533
1141	85			14	0.993533
1142	85	14			0.993533
1240		80		20	0.995493
1257	50		50		1.0
1300		33	66		0.997452
1301	66			33	0.997452
1302		66	33		0.997452
1306		33	33	33	0.997753
1307		33	33		0.997753
1309		33	33	33	0.997753

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain