SustainPineDB

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene5566

Length: 1496 nt

UniGene Fasta

Ace file of the UniGene biog2_v2.0_unigene5566

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene22321	1/38
SustainPine v2.0	sp_v2.0_unigene25258	37/38

Source	Descriptions	Term	Type	Identity
AutoFact	Mitochondrial oxoglutarate/malate carrier protein, putative n=3 Tax=rosids RepID=B9T1E7_RICCO	-	-	84%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	95%
Blast2go	mitochondrial 2-oxoglutarate malate carrier	-	-	91%

Source	InterPros	Term	Type	e value	Identity
Sma3		IPR001993	-	0.0	-
Sma3	Mitochondrial substrate/solute carrier	IPR018108	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LN90

Fln msg: Overlapping hits, possible frame ERROR between 823 and 820,

Fln protein: MAGEKPKTGNVWNTVKPFVNGGTSGMLATCVIQPVDMIKVRIQLGQGSGYNVAKNMLRDEGFGAFYKGLSAGLLRQATYTTARLGSFRILTNKAIAANDGKPLPLYQKALCGLTAGAIGACVGSPADLALIRMQADATLPAAQRRHYKNAFHALYRITADEGVLALWKGAGPTVVRAMALNMGMLASYDQAVEFxxxTMGLSEATTVVGASAVSGFFASACSLPFDYVKTQIQKMQPDASGKYPYTGSMDCFVKTFKAGGPFKFYTGFPVYCIRIAPHVMMTWIFLNQIQKFQKSIGL*

Protein Length: 300

Fln nts: AAACTGCCCTCTTCCTCTTGCAATATAAAGTAAAGGGTCTTATAGATCATGGGGGATCGAAGAGGGGCTTTGCAGCACAGGGGAGATCAGATCTCTGCCTATTCTTCTTCATTCTTGTTGAGGAGGCGTAGACAGCCAGATTCTTCTCGCCGGTTTTTTCTCATATCATTGGTGACCTCAGGAAGAGGAAGGAGGGCAGTTTCAGATCGATCGGGTGTTCGAGTCCTTCAGAGAG_-_ATGGCAGGGGAGAAGCCCAAGACAGGCAACGTGTGGAATACAGTGAAGCCATTTGTCAATGGAGGAACCTCTGGTATGCTCGCCACGTGTGTCATCCAGCCCGTGGACATGATTAAGGTGCGCATTCAGTTGGGTCAAGGTTCGGGTTATAATGTTGCAAAGAACATGCTGCGGGATGAGGGCTTTGGCGCTTTTTACAAGGGGTTATCAGCTGGTCTGTTAAGACAGGCAACCTATACAACAGCACGTCTTGGATCATTTAGGATATTGACAAACAAAGCAATTGCAGCTAATGATGGGAAACCTCTACCTCTTTATCAGAAGGCTCTTTGTGGATTGACAGCAGGAGCTATTGGGGCATGTGTTGGAAGTCCCGCAGATTTAGCTCTCATCCGCATGCAGGCGGATGCAACTTTGCCTGCTGCCCAGCGGCGGCATTACAAAAATGCATTCCATGCACTATACCGCATTACTGCTGATGAAGGGGTTCTAGCCCTATGGAAAGGGGCGGGTCCAACAGTTGTCCGAGCAATGGCCTTAAATATGGGCATGCTTGCTTCTTATGATCAAGCTGTAGAATTTxxxxxxxxxACCATGGGCCTTTCTGAAGCTACAACTGTGGTTGGTGCAAGTGCTGTTTCTGGTTTTTTTGCATCTGCGTGTAGTCTGCCCTTTGATTATGTGAAGACTCAGATACAAAAGATGCAACCCGATGCCAGTGGGAAGTATCCATATACAGGCTCCATGGACTGTTTTGTGAAAACATTCAAAGCAGGGGGACCATTTAAGTTCTATACTGGGTTTCCTGTTTATTGCATTCGAATTGCTCCCCATGTCATGATGACATGGATATTCTTAAACCAAATTCAGAAGTTTCAGAAATCTATTGGGTTGTAA___GACTTCTTTTGGCTTGAGGAAGAGGCGGAATATTTTTGTCTTCGATCGTAGGAAACATTATTACCTGTTTCTCCTTTTTCACCTAATTTAGTTGACTCGGCAATGCACTCTTGGTTCATATTAAGGGCCTCATGTTTTCTTTTCGCCTTTGATGTTTAATTTTCACATCCATTTCTTTTACCAGAGTAACTGCCATAAAGATAATATGCTACATAACAGTGTTCTAATAAGAAATTTTGGTTAATGTGCTTGGATAGGGGTTGGTCTGTAGGCGATACCATTTATAGATTCATTCTTGGACCACCAGGCACATGCCTCGAAATTGATTTTTTTGTAATAAATTAGTTCACTCGGGCCAACTACGG

Fln Alignment:

Contig5566___MAGEKPKTGNVWNTVKPFVNGGTSGMLATCVIQPVDMIKVRIQLGQGSGYNVAKNMLRDEGFGAFYKGLSAGLLRQATYTTARLGSFRILTNKAIAANDGKPLPLYQKALCGLTAGAIGACVGSPADLALIRMQADATLPAAQRRHYKNAFHALYRITADEGVLALWKGAGPTVVRAMALNMGMLASYDQAVEFSxDTMGLSEATTXXXXXXXXXXXXXXCSLPFDYVKTQIQKMQPDASGKYPYTGSMDCFVKTFKAGGPFKFYTGFPVYCIRIAPHVMMTWIFLNQIQKFQKSIGL
B8LN90_________________MAGEEPKTGSVWNTVKPFVNGGASGMLATCVIQPVDMIKVRIQLGQGSGYNVAKNMLRDDGFGAFYKGLSAGLLRQATYTTARLGSFRILTNKAIAANDGKPLPLYQKALCGLTAGAIGACVGSPADLALIRMQADATLPPAQRRHYKNAFHALYRISGDEGVLALWKGAGPTVVRAMALNMGMLASYDQAVEFSxDTMGLSESTTVVAASAVSGFFASACSLPFDYVKTQIQKMQPDASGKYPYTGSMDCFVKTFKAGGPFKFYTGFPVYCIRIAPHVMMTWIFLNQIQKFEKSIGL

SNPs (tot: 8)

Position	A %	C %	G %	T %	Probability
261			75	25	0.996473
273	80		20		0.995493
309			87	12	0.992554
448	10			90	0.90298
450		10	90		0.90298
633			10	90	0.90298
690	90		10		0.90298
1441	66		33		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain