SustainPineDB

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene5556

Length: 946 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog2_v2.0_unigene5556 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene3143	21/21

Source	Descriptions	Term	Type	e value	Identity
AutoFact	pfam00582, Usp, Universal stress protein family	-	-	1.0e-21	26%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	96%
Blast2go	adenine nucleotide alpha hydrolases-like partial	-	-	0.0	83%

Source	GOs	Term	Type	Identity
Blast2go	protein folding	GO:0006457	Biological Process	83%
Blast2go	protein phosphorylation	GO:0006468	Biological Process	83%
Blast2go	response to heat	GO:0009408	Biological Process	83%
Blast2go	metal ion binding	GO:0046872	Molecular Function	83%
Blast2go	protein kinase activity	GO:0004672	Molecular Function	83%
Blast2go	heat shock protein binding	GO:0031072	Molecular Function	83%
Blast2go	ATP binding	GO:0005524	Molecular Function	83%
Blast2go	unfolded protein binding	GO:0051082	Molecular Function	83%
Blast2go	cytoplasm	GO:0005737	Cellular Component	83%

Source	InterPros	Term	Type	Identity
Sma3	Rossmann-like alpha/beta/alpha sandwich fold	IPR014729	-	-
Sma3	Universal stress protein A	IPR006015	-	-
Sma3	UspA	IPR006016	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NNA0

Fln msg: Overlapping hits, possible frame ERROR between 317 and 314,

Fln protein: MDVGNRKIAIAVDLSDESAFAVKWAVANYLRPGDNVILLHVRPTSVLYGADxxxIDLSVDTSDEESHQKLEDHFDAFTSSKASDLAQPLVEGNIPFKIHIVKDHDMKERVCLEVERLGVNAVIMGSRGFGASKRNCKSRLGSVSDYCVRHCVCPVVVVRFPEETEVAPSPDQIAVLHEVPEEDEGVLEDQDQLSDDAEEEEQADDVQKEQEKDGAQEEKQVDAEKDEERTDVVQEEKKKI*

Protein Length: 242

Fln nts: TGAGTGCAGGGGAGCTGAAATTCTTATCAATCTGCTTGTATATTTTTCTGTGTATACATCGATTCATTCGTATTGGAGATAATTGCAGAAGAGATTTTTGGTACAAATAGATATAATTTCGAGGTGGGCAGTGGAAATTTGTGGCAACAATTACAACT_-_ATGGACGTTGGAAATAGGAAAATCGCCATCGCAGTTGATCTGAGCGACGAGAGTGCGTTTGCCGTGAAATGGGCGGTGGCGAACTATCTCCGACCGGGCGACAACGTAATTCTCCTGCATGTACGCCCGACTAGTGTCCTCTACGGGGCCGACxxxxxxxxxATCGATCTTTCCGTCGACACCTCCGACGAGGAATCCCACCAGAAGCTCGAAGACCACTTCGATGCCTTCACGTCCTCCAAGGCCTCTGATCTAGCTCAGCCTCTGGTGGAGGGCAACATCCCCTTCAAGATTCACATCGTCAAGGACCACGACATGAAGGAGAGGGTCTGCCTCGAGGTCGAGAGGCTCGGCGTTAATGCTGTCATCATGGGGAGCAGGGGTTTCGGGGCCTCCAAGAGGAATTGCAAGAGCAGGCTCGGGAGTGTCAGCGATTACTGCGTTCGCCATTGCGTTTGCCCCGTTGTTGTTGTCAGGTTTCCAGAGGAGACAGAGGTCGCCCCTTCCCCTGATCAGATCGCCGTTCTTCACGAAGTGCCCGAAGAAGATGAGGGCGTTCTCGAGGATCAGGATCAATTATCAGATGATGCTGAAGAAGAAGAACAGGCAGATGATGTGCAAAAGGAGCAAGAGAAGGATGGTGCTCAGGAGGAGAAACAGGTAGATGCTGAGAAAGATGAAGAGCGGACAGATGTTGTTCAAGAAGAGAAGAAAAAAATATGA___ATATATTCTTAGAAAGCAAGTTAAAAGGGTTTTTGATGTTTTGCACCTACTGTGCTTGCACGTTGC

Fln Alignment:

Contig5556___MDVGNRKIAIAVDLSDESAFAVKWAVANYLRPGDNVILLHVRPTSVLYGADWxAIDLSVDTSDEESHQKLEDHFDAFTSSKASDLAQPLVEGNIPFKIHIVKDHDMKERVCLEVERLGVNAVIMGSRGFGASKRNCKSRLGSVSDYXXXXXXXXXXXXRFPEETEVAPSPDQIAVLHEVPEEDEGVXXXXXXXXXXXXXXXXXXXXXXXXXXDGAQEEKQVDAEKDEERTDVVQ
A9NNA0_________________MDVGNRKIAIAVDLSDESAFAVKWAVLNYLRPSDNVILLHVRPTSVLYGADWxAIDLSVDTSDEESHQKLEDHFDAFTSSKASDLAQPLVEGNVPFKIHIVKDHDMKERICLEVERLGVNAVIMGSRGFGASKRNCKSRLGSVSDYCVRHCVCPVVVVRFPEEPEAVPSPDHIAVLHEVPEEEEGVPEDQDQSSDGAEEEEQVDDVQKEQRKDGAQEEKQVHVQKDEQRTDVVQ

SNPs (tot: 14)

Position	A %	C %	G %	T %	Probability
612		14		85	0.993533
642	16		83		0.994512
696		11	88		0.923564
697		11	88		0.923564
698		11		88	0.923564
699	11	88			0.923564
700			88	11	0.923564
875	75	25			0.996473
876	75	25			0.996473
877		25		75	0.996473
880		75		25	0.996473
932		33		66	0.997452
934	66	33			0.997452
936		66		33	0.997452

SSRs (tot: 1)

Start position	End position	Sequence	Length
187	198	TTC TTC TTC TTC	12

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain