SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene5511

Length: 1008 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog2_v2.0_unigene5511 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene15877	26/27
SustainPine v2.0	sp_v2.0_unigene77554	1/27

Source	Descriptions	Term	Type	Identity
AutoFact	emp24/gp25L/p24 family/GOLD domain-containing protein [Arabidopsis thaliana] gb\|AAF13086.1\|AC009176_13 putative coated vesicle membrane protein [Arabidopsis thaliana] gb\|AAF21178.1\|AC013483_2 putative coated vesicle membrane protein [Arabidopsis thaliana]	-	-	70%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	40%
Blast2go	transmembrane emp24 domain-containing protein	-	-	82%

Source	InterPros	Term	Type	Identity
Sma3		IPR000348	-	-
Sma3	Cellulose synthase	IPR005150	-	-
Sma3	GOLD	IPR009038	-	-
Sma3	Extracellular solute-binding protein, family 3, conserved site	IPR018313	-	-

Full-Lengther Next Prediction

SNPs (tot: 14)

Position	A %	C %	G %	T %	Probability
643	90		10		0.90298
703		90		10	0.90298
704		10		90	0.90298
784		88		11	0.923564
801	11		77		0.968132
958	80	20			0.995493
959	80	20			0.995493
960	80	20			0.995493
961	80	20			0.995493
981		75	25		0.996473
982		50		25	0.995533
983		25		25	0.995533
984		75	25		0.996473
986	25			75	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain