SustainPineDB

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene5483

Length: 1417 nt

UniGene Fasta

Ace file of the UniGene biog2_v2.0_unigene5483

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene4514	37/107
SustainPine v2.0	sp_v2.0_unigene15325	24/107
SustainPine v2.0	sp_v2.0_unigene29055	44/107
SustainPine v2.0	sp_v2.0_unigene61836	2/107

Source	Descriptions	Term	Type	Identity
AutoFact	Uridylate kinase plant, putative n=1 Tax=Ricinus communis RepID=B9SKI0_RICCO	-	-	80%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	59%
Blast2go	uridylate kinase	-	-	87%

Source	GOs	Term	Type	e value	Identity
Blast2go	nucleobase-containing compound kinase activity	GO:0019205	Molecular Function	0.0	87%

Source	InterPros	Term	Type	Identity
Sma3	Adenylate kinase	IPR000850	-	-
Sma3	Peptidase aspartic, active site	IPR001969	-	-
Sma3	UMP-CMP kinase	IPR006266	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5A874

Fln msg: Overlapping hits, possible frame ERROR between 503 and 439, your sequence is longer than subject: 298 - 223

Fln protein: MGGWHRLRLRTLSRSNLFLVSSGVRFPYSAFSITNQGKKAAILEIFGSYFLPGEDSNSAYRSQAQFWFHSKSNFMTTEMAEAPTASVLEKKDNGVVSExxxxxxxxxxxxxxxxxxxxxxxIVENFGFTHLSAGDLLRAELKSGSENGTMIENMIKEGKIVPSEVTVKLLQKAMHESENDKFLIDGFPRNEENRAAFENVTGIQPDFILFFDCPEEEMLRRLLNRNQGRVDDNIETITKRFKVFSESSLPVVNYYDSKGKVRKIDAVKTREDIFEDIKLLFATYIQEKEEVKVGSLN*

Protein Length: 299

Fln nts: ATGGGGGAAATTCCGAAATTCTTCCGAAGATTACGCATCATAGAGAAAATCATGGGGGAACTGTTACAGAAAAGGTTGCTTACTTGACGGGGTGTGGGTATGGTGTTCAATATAAATACAAGTGAAGGCCAGCTATTACGAGC_-_ATGGGAGGCTGGCATCGTCTGAGATTACGGACGTTGTCGAGATCCAATCTCTTCCTGGTTTCATCTGGTGTCCGTTTTCCATATTCTGCCTTTTCAATTACAAATCAGGGAAAAAAGGCAGCCATACTTGAAATCTTTGGCAGCTATTTTCTGCCAGGTGAAGACAGCAATTCTGCATACAGAAGCCAGGCACAATTTTGGTTCCATTCCAAGTCAAACTTCATGACCACTGAGATGGCAGAAGCTCCTACAGCTTCAGTATTGGAAAAGAAGGATAATGGAGTTGTGTCTGAGxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxATTGTTGAAAATTTTGGGTTTACACACCTAAGTGCTGGGGATCTTCTGCGTGCTGAGCTTAAATCAGGCTCAGAAAATGGAACGATGATTGAGAATATGATAAAGGAAGGAAAGATTGTTCCCTCAGAAGTGACGGTTAAGCTCTTACAAAAGGCAATGCATGAAAGTGAGAACGATAAATTTTTGATTGATGGGTTTCCTCGAAATGAAGAGAACCGTGCAGCATTTGAAAATGTTACAGGGATCCAACCGGATTTTATTCTATTCTTTGACTGTCCTGAGGAAGAGATGTTGAGGCGGCTCCTGAATAGGAACCAAGGCCGAGTTGATGACAATATAGAGACAATAACGAAGCGCTTCAAGGTCTTTTCTGAATCAAGTCTACCAGTTGTCAATTACTACGACTCAAAGGGGAAGGTTCGCAAGATCGATGCAGTAAAGACACGGGAAGATATCTTTGAGGATATTAAACTTCTTTTCGCAACTTACATTCAAGAAAAAGAGGAAGTAAAAGTTGGGTCTCTCAATTGA___ATTCAAGTATCATAGGCCTTATTGATAACAAGGGTGGTTTTAGTCATCACATATCGAAGCTACTGCAGTATGTCGTTATGCTGTTTAGTGTTATGTAGCAAATTGTACGAGTCCTTGTAGTCAGGACTGTAGGCCATATACAAGTCTTTTTTACTACCTAATTAAGGTTAGGATTATTAGAAATCATTTAGATGACAAGGCTTGTCGGGTGTGTTACATAGGCCTTTATATTGGTTCCTGTTGCAGTTCTTATTCTACAAGGGGCTAACTTCATAGTCTGTTACGGGATTGAACGAAGATATTTTAGTACTTTTGTTTCTTCTGTATGTAAAGGAGATGAAAATAATCTACTAATTTTTATCTATGATAACACTCCTGGTAG

Fln Alignment:

Contig5483___MTTEMAEAPTASVLEKKDNGVVSEExxxxxxxxxxxxxxxxxxxxxxIVENFGFTHLSAGDLLRAELKSGSENGTMIENMIKEGKIVPSEVTVKLLQKAMHESENDKFLIDGFPRNEENRAAFENVTGIQPDFILFFDCPEEEMLRRLLNRNQGRVDDNIETITKRFKVFSESSLPVVNYYDSKGKVRKIDAVKTREDIFEDIKLLFATYIQEKEEVKVGSLN
D5A874_________________MATDMAEATTAAVLEKKDNGVMPEExxxxxxxxxxxxxxxxxxxxxxIVENFGFTHLSAGDLLRAEIKSGSENGTMIENMIKEGKIVPSEVTVKLLQKAMQESENDKFLIDGFPRNEENRAAFENVTGIQPEFILFFNCPEEEMLKRLLNRNQGRVDDNVETITKRFRVFSESSLPVVNYYDSKGKVRKIDAVKSKEDVFENIKLLFAPFIQEKEEVEVGSLN

SNPs (tot: 12)

Position	A %	C %	G %	T %	Probability
798		33		66	1.0
864	20			80	0.995493
865		80		20	0.995493
866	80		20		0.995493
867	80		20		0.995493
940	83		16		0.994512
946			87	12	0.992554
947	87		12		0.992554
948		87	12		0.992554
949	88		11		0.923564
1281	88		11		0.923564
1326		14		85	0.993533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain