SustainPineDB

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene5466

Length: 1082 nt

UniGene Fasta

Ace file of the UniGene biog2_v2.0_unigene5466

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene16060	3/32
SustainPine v2.0	sp_v2.0_unigene60527	29/32

Source	Descriptions	Term	Type	Identity
AutoFact	ribosomal protein L7	-	-	68%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	98%
Blast2go	ribosomal protein l7	-	-	91%

Source	GOs	Term	Type	Identity
Blast2go	protein binding	GO:0005515	Molecular Function	91%
Blast2go	plasma membrane	GO:0005886	Cellular Component	91%
Blast2go	cell wall	GO:0005618	Cellular Component	91%
Blast2go	vacuolar membrane	GO:0005774	Cellular Component	91%
Blast2go	cytosolic large ribosomal subunit	GO:0022625	Cellular Component	91%
Blast2go	chloroplast	GO:0009507	Cellular Component	91%

Source	InterPros	Term	Type	Identity
Sma3	Ribosomal protein L30, N-terminal	IPR012988	-	-
Sma3	Ribosomal protein L7, eukaryotic	IPR005998	-	-
Sma3	Ribosomal protein L30, conserved site	IPR018038	-	-
Sma3		IPR000517	-	-

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: A9P1J6

Fln msg: Unexpected STOP codon in 5 prime region, your sequence is shorter than subject: 213 - 246

Fln protein: MLQNQKEAQNRKLIFKRAEKYIKEYRDQERDLIRLKREAKLSGGFYVDPEAKLLFIIRIRGINDMHPKTRKILQLLRLRQIFNGVFLKVNKATVNMLQRVEPYVTYGYPNLKSIRELIYKRGYGKVNKQRIPLTDNAVIEQVLGQYGIICIEDLIHEIITVGPNFTKANNFLWPFKLSAPSGGLKKKRNHYIEGGDAGNRELKINEMIRRMN*

Protein Length: 214

Fln nts: ATGGGAGCTGCTTTCGCCAGGTTACGGTGGCCTCCAGACGCTCTGTGACATAGTTGGCTCCAGGTCGAGGTTGTTCACTTCGTCACCTGTCTCTGGCAGCGACACGCCCAGAAAAAGATATGGGTGAAGAAGAGGCAAAGGCAATTGCTGTAGTGCCAGAATCTGTGTTGAAGAAGAGGAAAAGAAATGAAGAATGGGAGAAGAATAAAAAGGAGCAGTTAG_-_ATGCTGCAAAATCAAAAAGAAGCTCAAAACCGTAAGCTTATATTCAAGAGGGCTGAGAAATATATCAAGGAGTACAGGGACCAGGAGCGGGATCTCATCAGACTGAAGCGAGAAGCCAAACTGAGTGGAGGTTTCTATGTTGATCCAGAAGCCAAGCTGCTTTTCATTATTCGCATCCGTGGTATTAATGATATGCATCCAAAGACACGGAAGATCTTACAGCTATTGCGTTTGAGGCAGATCTTCAATGGCGTCTTCCTGAAAGTGAACAAAGCAACTGTGAATATGTTGCAGAGGGTTGAACCATATGTGACTTATGGCTATCCTAATTTGAAGAGTATTAGAGAGCTGATTTACAAAAGAGGTTATGGAAAGGTTAACAAGCAGAGGATTCCTCTGACAGACAACGCTGTTATTGAACAGGTTTTGGGTCAGTATGGAATCATCTGTATTGAAGATCTCATTCATGAGATAATTACTGTTGGTCCTAATTTCACAAAGGCAAACAACTTTTTATGGCCATTTAAGCTCAGTGCTCCATCTGGTGGGTTGAAGAAGAAAAGGAACCACTATATTGAGGGTGGAGATGCTGGAAATCGTGAGCTTAAAATTAATGAGATGATTAGGAGGATGAATTAGTAACATGATTATACTGTTATTTAGCAAAGTTAATTCTAGGTGCCTTTTTAGCATTTGGTCAATCTGTAAAGAGTTGCTTTACGGTTTTAGCATCAAACATCAAAAGGGGTATTCTTAACAATTTTGGTAGGTAATTATATAGTTTGAGCTGTTCCACGGCGTAGATTTTCAAATACCTTTTGTTAGACACTGAACGTATAGCTAAATAATTTGATTCATAT

Fln Alignment:

Contig5466___KEAQNRKLIFKRAEKYIKEYRDQERDLIRLKREAKLSGGFYVDPEAKLLFIIRIRGINDMHPKTRKXXXXXXXXXXFNGVFLKVNKATVNMLQRVEPYVTYGYPNLKSIRELIYKRGYGKVNKQRIPLTDNAVIEQVLGQYGXXXXXXXXXXXXTVGPNFTKANNFLWPFKLSAPSGGLKKKRNHYIEGGDAGNRELKINEMIRRMN
A9P1J6_________________KRAQNRKLIFKRAEKYIKEYRDQERDLIRLKRDAKLRGGFYVDPEAKLLFIIRIRGINDMHPKTRKILQLLRLRQIFNGVFLKVNKATVNMLQRVEPYVTYGYPNLKSIRELIYKRGYGKVNKQRIPLTDNAVIEQVLGQYGIICIEDLIHEIITVGPNFTKANNFLWPFKLSAPSGGLKKKRNHYIEGGDAGNRELKINELIRRMN

SNPs (tot: 6)

Position	A %	C %	G %	T %	Probability
553	60		40		1.0
588	80		20		0.995493
599	71		28		1.0
627	85		14		0.993533
629	71		28		1.0
923		33		66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain