SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene5463

Length: 999 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog2_v2.0_unigene5463 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene16050	32/32

Source	Descriptions	Term	Type	e value	Identity
AutoFact	RNA polymerase Rpb6 [Arabidopsis thaliana] gb\|AAK44116.1\|AF370301_1 putative DNA-directed RNA polymerase II subunit [Arabidopsis thaliana] dbj\|BAB11042.1\| DNA-directed RNA polymerase II subunit-like protein [Arabidopsis thaliana] gb\|AAL34262.1\| putative D	-	-	1.4013e-45	66%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	93%
Blast2go	dna-directed rna polymerases and iii subunit rpabc2-like	-	-	0.0	84%

Source	InterPros	Term	Type	Identity
Sma3	DNA-directed RNA polymerase, subunit K/RPABC2	IPR006111	-	-
Sma3	RNA polymerase, subunit omega/K/RPABC2	IPR006110	-	-
Sma3	RNA polymerase subunit, RPB6/omega	IPR012293	-	-

Full-Lengther Next Prediction

SNPs (tot: 7)

Position	A %	C %	G %	T %	Probability
768	90		10		0.90298
934	88	11			0.923564
935		11	88		0.923564
936	88	11			0.923564
952		14		85	0.993533
953		14	85		0.993533
955	14		85		0.993533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain