SustainPineDB

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene5457

Length: 1286 nt

UniGene Fasta

Ace file of the UniGene biog2_v2.0_unigene5457

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene13952	34/38
SustainPine v2.0	sp_v2.0_unigene17887	4/38

Source	Descriptions	Term	Type	e value	Identity
AutoFact	DUF761 domain containing protein	-	-	2.0e-15	23%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	63%
Blast2go	uncharacterized protein	-	-	0.0	58%

Source	GOs	Term	Type	e value	Identity
Blast2go	response to abscisic acid stimulus	GO:0009737	Biological Process	0.0	58%

Source	InterPros	Term	Type	e value	Identity
Sma3	Protein of unknown function DUF761, plant	IPR008480	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NMZ2

Fln msg: Overlapping hits, possible frame ERROR between 522 and 513,

Fln protein: MEALSQMWVAMVSWFTPTMLFLLLNAVIGTIVITSGMRQSNNTSNKDLRRNPSLLSRLSSFSLSRGKVEEVVEFENRAEEIGKMPDNVVLKEEKMPDNLVSEEEKMPDNVMVEEEKILVEMAEERKPKVEAKNNGASQKTxxxxxANGLGRSKSDTPPIGDLRAPPLPQKLKKSGTFESPFSHFDSQALTVLETTSEVVHTVDSDDNGPEDTEEVNAKADDFINKFKQQLKLQRLESIMRYKEMINRGK*

Protein Length: 251

Fln nts: ATGGGGACCAGAAGGGGAGCTGGGGGAGCTGTGGGATCTTGAAACCCAGCTGAGAAAGGGACCTTGCAGTTTGTATATTGCAGGAGAGTC_-_ATGGAAGCTCTGTCTCAAATGTGGGTTGCTATGGTAAGCTGGTTCACGCCCACAATGCTGTTTTTGTTGTTGAATGCTGTGATTGGAACCATTGTTATTACTTCTGGAATGCGTCAGAGTAATAACACCAGCAACAAGGACTTGAGAAGAAACCCATCTCTGTTATCCAGACTGAGCAGCTTTAGTTTATCTAGAGGCAAGGTTGAGGAGGTAGTTGAATTTGAAAACAGGGCAGAAGAAATAGGGAAAATGCCAGATAATGTTGTATTGAAAGAAGAGAAAATGCCGGATAATCTTGTATCAGAGGAAGAGAAAATGCCAGATAATGTTATGGTTGAAGAAGAAAAAATACTGGTGGAAATGGCAGAGGAAAGGAAACCCAAAGTGGAGGCTAAGAACAATGGGGCTTCCCAGAAAACCxxxxxxxxxxxxxxxGCTAATGGGTTGGGAAGAAGCAAATCTGACACACCCCCTATTGGAGATCTCCGTGCTCCTCCTCTGCCACAGAAGCTCAAGAAATCGGGGACTTTTGAGTCCCCTTTCAGTCATTTTGACAGCCAGGCCCTTACAGTCTTGGAAACTACCTCTGAAGTTGTGCACACTGTGGATTCTGATGACAATGGCCCTGAAGATACCGAAGAAGTGAATGCCAAGGCCGACGACTTCATCAACAAGTTCAAGCAGCAGCTCAAGTTGCAGCGGCTTGAGTCCATCATGCGCTACAAGGAGATGATCAACCGGGGCAAATAG___TATGCCCAGGTGCATTGCATTGCACTGCACTGCATTTGCATTTGCCTTACAGAGTGATGTCACTTACTGTGAGTTTGCGCTTACTCTGGAGATTGTTTTCTTATCACCAGCAGCCATGACTCGCAGCAACTGTGAACCACTAGAACTCATGCCTTTGGATGCAACTATTGGTAACTGATGGAAGCTTATCTAAGTTGGTTTTAATTTGTTTATCAGTCGTTGGTGCTTACTCTGGTCTGATATAAAATGAGGTATATAGAATCAATTGCCTACGAGTCTACAGTTCAAATTGTCCACAGTATAGGACCGAATGCATTCTACTTTTCTAGTTCTTATTATTCATTGTTCTACTGTTGATGTACCCTGTTCCTCTCAGTGACTAAAAACTTCTAATTAGATGTTATGAACCTTAATGGATGCATATGCTTTGAATGTCCTTTAGATTTG

Fln Alignment:

Contig5457___FVYCRRVMEALSQMWVAMVSWFTPTMLFLLLNAVIGTIVITSGMRQSNNT-SNKDXXXXXXXXXXXXXXXXXXGKXXXXXXXXXXXXXIGKMPDNVVLKEEKMPDNLVSEEEKMPDNVMVEEEKILVEMAEERKPKVEAKNNGASQKTQxxxIANGLGRSKSDTPPIGDLRAPPLPQKLKKSGTFESPFSHFDSQALTVLETTSEVVHTVDSDDNGPEDTEEVNAKADDFINKFKQQLKLQRLESIMRYKEMINRGK
A9NMZ2_________________FVYCRTVMEALSQMWVAMLSWFTPTVLFVLLNAVIGTIVVTSGMRQSNNTNANKDLRRNPSLLYRLSSFGLYRGK----------------------VEEVVEFENQEEEEEKMPDAVVVEEEKPRAKMPEERKSQVEVKTGGTSVKTQxxxISNGLGRSKSDTPPTADLHPTPLPRKLKKSGTFESPFSHFDSQALSVLEATPEVVNTVESDDNGPEDTEEVNAKADDFINKFKHQLKLQRLESIMRYKDMINRGK

SNPs (tot: 4)

Position	A %	G %	T %	Probability
682		90	10	0.90298
818	90		10	0.90298
1013	85	14		0.993533
1144	66	33		0.997452

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain