SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene5447

Length: 998 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog2_v2.0_unigene5447 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene7185	32/35
SustainPine v2.0	sp_v2.0_unigene60912	3/35

Source	Descriptions	Term	Type	Identity
AutoFact	Ubiquitin carrier protein n=2 Tax=Picea sitchensis RepID=B8LMJ5_PICSI	-	-	98%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	98%
Blast2go	ubiquitin-conjugating enzyme	-	-	91%

Source	ECs	Term	Type	e value	Identity
Blast2go	Ligases, Forming carbon-nitrogen bonds, Acid--D-amino-acid ligases (peptide synthases).	EC:6.3.2.-	-	0.0	91%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Tryptophan metabolism	00380		0.0	91%
Blast2go	Biosynthesis of siderophore group nonribosomal peptides	01053		0.0	91%

Source	GOs	Term	Type	Identity
Blast2go	post-translational protein modification	GO:0043687	Biological Process	91%
Blast2go	ATP binding	GO:0005524	Molecular Function	91%
Blast2go	acid-amino acid ligase activity	GO:0016881	Molecular Function	91%

Source	InterPros	Term	Type	Identity
Sma3		IPR015580	-	-
Sma3	Ubiquitin-conjugating enzyme/RWD-like	IPR016135	-	-
Sma3	Ubiquitin-conjugating enzyme, E2	IPR000608	-	-

Full-Lengther Next Prediction

SNPs (tot: 3)

Position	A %	C %	G %	T %	Probability
614	83		16		0.994512
998		25		25	0.995533
1001	20	80			0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain