SustainPineDB

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene5433

Length: 1290 nt

UniGene Fasta

Ace file of the UniGene biog2_v2.0_unigene5433

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene6777	37/37

Source	Descriptions	Term	Type	Identity
AutoFact	Whole genome shotgun sequence of line PN40024, scaffold_38.assembly12x (Fragment) n=1 Tax=Vitis vinifera RepID=D7U593_VITVI	-	-	45%
FL-Next	tr=Extensin-like protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	35%
Blast2go	pollen ole e 1 allergen and extensin family protein	-	-	54%

Source	GOs	Term	Type	e value	Identity
Blast2go	cell part	GO:0044464	Cellular Component	0.0	54%

Source	InterPros	Term	Type	Identity
Sma3	Amidase	IPR000120	-	-
Sma3	Aminoacyl-tRNA synthetase, class I, conserved site	IPR001412	-	-
Sma3	Plant specific eukaryotic initiation factor 4B	IPR010433	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: E0ZE90

Fln msg: your sequence is longer than subject: 333 - 159

Fln protein: MGSIRTSELFAVLVLVVVAGYADAVATIVGNVFCDQCRDGQRSLFDVPIYGAKVGVECRDSDGQMTMSMQETTDLLGDFIMKVDGTPDMSGCSARVIDSPADSGCNITASPAQPLKLSFKLFSVELYIVGSLFCQPLKPMASLCPNTDPPAITPPHNLPVFSPPNRAPPATAPPRNPPSLPQPHPAPPATTPPTHSSPIISLPPLPFFQDSACSYEYWVKIQYRCYWRLVSPNTKVSFAFGEAAAKKYGRNMTLWEGLQGRGDVYRVLLREATTSLLNSYNSFSFRYNTLNVFLHMNSALQGSLHDALKQALYFKRANLGGGNTKCLLKPCK*

Protein Length: 334

Fln nts: ATGGGGAAGTTTTCAGAGTCATGCCTCTATATAAATCTCTGCATATACTTATGGGGAGGAAGGAAATAAAAAGGTTGCTTGACCGTCTAACAGGAAGGGCTAGGGAGCA_-_ATGGGTAGCATTCGAACATCGGAACTGTTTGCAGTTCTGGTTCTTGTGGTAGTTGCAGGATATGCTGATGCAGTGGCCACAATAGTGGGCAATGTGTTTTGTGATCAATGTCGGGATGGTCAACGTTCTCTCTTTGATGTTCCTATATATGGGGCAAAAGTAGGAGTTGAATGCAGAGATAGTGATGGACAGATGACAATGTCGATGCAGGAAACCACTGATCTGCTCGGAGACTTCATCATGAAAGTTGATGGTACTCCTGACATGTCTGGATGTTCCGCTAGAGTCATCGACAGCCCGGCAGATTCTGGATGCAACATAACCGCGAGCCCGGCCCAGCCCCTCAAGCTGAGCTTCAAGCTGTTCAGTGTGGAACTGTACATAGTGGGTTCTCTCTTCTGTCAACCACTCAAGCCTATGGCCTCATTATGTCCCAACACTGACCCACCTGCAATTACCCCTCCACACAATCTTCCCGTTTTTTCTCCGCCCAACCGCGCCCCACCTGCAACCGCCCCTCCACGTAATCCTCCTTCTCTTCCACAGCCGCACCCTGCCCCACCTGCAACAACTCCTCCCACTCACTCATCTCCCATCATCTCTTTACCACCGCTGCCATTCTTTCAGGATTCTGCCTGTTCTTACGAGTATTGGGTAAAGATACAATACAGGTGTTACTGGAGGCTAGTGAGTCCTAATACCAAAGTGAGTTTTGCATTTGGGGAAGCAGCTGCGAAGAAGTATGGAAGAAACATGACTCTGTGGGAAGGCTTACAAGGACGAGGGGATGTGTATAGAGTATTGCTCAGAGAAGCAACAACATCACTCCTCAATTCTTATAACAGTTTTAGCTTTCGTTACAATACTCTCAACGTATTTCTGCATATGAACTCTGCATTACAAGGATCTCTCCATGATGCTCTAAAACAAGCTTTATATTTCAAGAGAGCTAATCTGGGAGGAGGAAATACTAAGTGCCTGCTTAAACCTTGTAAATGA___CCACCAACAAAGGAGATCAACTGTCCACAAGTCTTACTTTTTCCAGTACATCATGCTTCCTCCTCTTCTTGTTAGCATATCAATGGCATACCCGCCATTTATTTATGCTCTCTATATACATTGTAGTAGCAGGTATATTACTGCAGAACATATATATTCATCGATGAATCCACATCCACATT

Fln Alignment:

Contig5433___IVGNVFCDQCRDGQRSLFDVPIYGAKVGVECRDSDGQMTMSMQETTDLLGDFIMKVDGTPDMSGCSARVIDSPADSGCNI-TASPAQPLKLS
E0ZE90_________________VTGKVYCDNCAAGYPTRISPPIPGATVAVECKDRAGKRLFYNEQSTDNNGLFNIAVQGEHEHDACEAFTVSSP--TSCNIPTDSSRGPVFLT

SNPs (tot: 6)

Position	A %	C %	G %	T %	Probability
584		20		80	0.995493
872		83		16	0.994512
917	22	77			0.999999
919		77	22		0.999999
920	77		22		0.999999
1273	25	75			0.996473

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain