SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene5426

Length: 906 nt

UniGene Fasta

Ace file of the UniGene biog2_v2.0_unigene5426

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene16951	25/32
SustainPine v2.0	sp_v2.0_unigene17315	7/32

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Tubulin folding cofactor A n=6 Tax=Poaceae RepID=A5CFZ2_HORVD	-	-	1.0e-36	71%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	94%
Blast2go	tubulin-specific chaperone a	-	-	0.0	86%

Source	GOs	Term	Type	e value	Identity
Blast2go	cytokinesis	GO:0000910	Biological Process	0.0	86%
Blast2go	tubulin complex assembly	GO:0007021	Biological Process	0.0	86%

Source	InterPros	Term	Type	e value	Identity
Sma3	Tubulin binding cofactor A	IPR004226	-	0.0	-

Full-Lengther Next Prediction

SNPs (tot: 23)

Position	A %	C %	G %	T %	Probability
337			85	14	0.999981
382		14	85		0.999981
498		83	16		0.999991
529	83		16		0.999991
602	25		50		0.995533
619	50		50		1.0
684		33		66	1.0
688	33		66		1.0
690	33		66		1.0
695	66		33		1.0
734	37		62		1.0
742		62		37	1.0
749			37	62	1.0
767			62	37	1.0
778		37	62		1.0
796		37		62	1.0
807		28		71	1.0
811	28		71		1.0
812	28	71			1.0
820		71		28	1.0
822	71	28			1.0
835		60		40	1.0
840			50	25	0.995533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain