SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene5413

Length: 1006 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog2_v2.0_unigene5413 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene23663	40/40

Source	Descriptions	Term	Type	Identity
AutoFact	Calmodulin-7 n=219 Tax=Eukaryota RepID=CALM7_ARATH	-	-	95%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	99%
Blast2go	calmodulin	-	-	98%

Source	GOs	Term	Type	Identity
Blast2go	calcium-mediated signaling	GO:0019722	Biological Process	98%
Blast2go	regulation of photomorphogenesis	GO:0010099	Biological Process	98%
Blast2go	protein binding	GO:0005515	Molecular Function	98%

Source	InterPros	Term	Type	Identity
Sma3	EF-hand-like domain	IPR011992	-	-
Sma3	EF-hand	IPR018248	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-
Sma3	EF-HAND 2	IPR018249	-	-
Sma3	Calcium-binding EF-hand	IPR002048	-	-

Full-Lengther Next Prediction

SNPs (tot: 8)

Position	A %	C %	G %	T %	Probability
583		11	88		0.923564
592		11		88	0.923564
906	75	25			1.0
907		25		75	1.0
909		25		75	1.0
910	75	25			1.0
911	50	25		25	1.0
912		33	66		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain