SustainPineDB

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene5393

Length: 1365 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog2_v2.0_unigene5393 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene7698	49/49

Source	Descriptions	Term	Type	Identity
AutoFact	Probable aquaporin n=4 Tax=Picea RepID=O65045_PICMA	-	-	84%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	93%
Blast2go	aquaporin	-	-	89%

Source	GOs	Term	Type	Identity
Blast2go	transmembrane transport	GO:0055085	Biological Process	89%
Blast2go	transporter activity	GO:0005215	Molecular Function	89%
Blast2go	integral to membrane	GO:0016021	Cellular Component	89%

Source	InterPros	Term	Type	e value	Identity
Sma3	Aquaporin	IPR012269	-	0.0	-
Sma3	Major intrinsic protein	IPR000425	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NND5

Fln msg:

Fln protein: MAKESGTDIEPPAKDYKEPPPAPFVDVREFSLWSFYRAVIAEFIATLLFLYITIATVIGHSRTKANCGSVGVLGIAWSFGGMIFILVYCTAGISGGHINPAVTFGLFLARKVSLPRAVFYMIAQCLGAICGVGLVKAFQKSYYDKYGGGANVVAHGYTKGVGLAAEIIGTFILVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFIVHLGTIPITGTGINPARSFGAAVIYGHQKAWDDQWIFWVGPFIGAACAAAYHQYILRAGVIKALGSFRSVPSI*

Protein Length: 281

Fln nts: ATGGGGAAATCAGATGAAATTCTCGAAGGCTCTTAGATTCCTGTTTGAGGATAAAGTTGAGATGGGCATCTAGTTGTATCCAAGGCCTTAAATGCGAGCTCGGTTGTCTTCATGGGGACACTCTGAGACGAGAAAAAAACACCAAGGGAGGTGAAGTGAAGTTGCTGTGAAGAAATCTGTGTCTGAACTTGAATAG_-_ATGGCAAAAGAAAGTGGAACTGATATAGAGCCTCCTGCCAAGGACTACAAAGAGCCCCCACCAGCTCCTTTTGTTGATGTTAGGGAGTTCTCCCTGTGGTCCTTCTACCGTGCTGTGATAGCAGAGTTCATTGCCACGCTGCTCTTCCTCTACATCACTATTGCCACTGTAATTGGCCATTCAAGGACCAAGGCTAACTGTGGCAGTGTGGGTGTTCTTGGTATTGCTTGGTCCTTTGGAGGAATGATTTTCATTCTGGTTTACTGCACTGCTGGTATTTCAGGTGGTCACATAAACCCTGCAGTAACATTTGGGCTCTTTTTAGCTAGGAAGGTATCCTTGCCAAGGGCTGTTTTCTACATGATAGCTCAGTGTTTGGGTGCCATTTGTGGAGTAGGACTGGTGAAAGCATTCCAGAAATCTTACTATGACAAGTATGGGGGTGGAGCTAATGTTGTCGCTCATGGTTACACTAAAGGAGTGGGGTTGGCAGCAGAAATCATCGGTACCTTTATACTGGTCTACACTGTTTTCTCAGCTACGGATCCCAAACGCAGTGCTCGAGACTCCCATGTTCCTGTATTGGCACCTTTGCCTATTGGGTTTGCTGTGTTCATAGTGCACCTGGGTACCATCCCTATAACAGGCACTGGTATCAACCCTGCAAGGAGTTTTGGTGCAGCTGTTATCTATGGTCATCAAAAGGCCTGGGATGATCAGTGGATCTTTTGGGTTGGCCCTTTCATTGGTGCTGCGTGTGCAGCAGCCTACCACCAGTATATCCTGCGAGCAGGAGTGATTAAGGCCTTGGGCTCTTTCCGCAGTGTTCCAAGTATATAG___TTGAAGTACATCGTGCTTGTATTGATTGTGAAGATGGTTCGTCTATTATTAAAGAGACAGATAGACTGCAAGCAAAATTATATTGGTGTAAATTTAGAGTGTTGCTTAAATATGTATAAATGTAAGGCATTGAAATTTGCACTTTCATTCATGCAGTGTTTGCAAATTCCTGATGTTGTATTTCTTAATTTTGAGTTTCAAACATTGTGACGAGGGAAGTCTAGATTAGCAAACTTCTGCAACTAGTCTTCTTAGAAAAATGAGAGTTTCAAATATAAATGGAAGTATGCTTATATTTAATGTATGCCAGAGGCATGGAAGCTGTTTTC

Fln Alignment:

Contig5393___MAKESGTDIEPPAKDYKEPPPAPFVDVREFSLWSFYRAVIAEFIATLLFLYITIATVIGHSRTKANCGSVGVLGIAWSFGGMIFILVYCTAGISGGHINPAVTFGLFLARKVSLPRAVFYMIAQCLGAICGVGLVKAFQKSYYDKYGGGANVVAHGYTKGVGLAAEIIGTFILVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFIVHLGTIPITGTGINPARSFGAAVIYGHQKAWDDQWIFWVGPFIGAACAAAYHQYILRAGVIKALGSFRSVPS
A9NND5_________________MAKESETDMEPPAKDYTDPPPAPFFHFREFSLWSFYRALIAEFIATLLFLYITVATVIGHKRTQANCGSVGVLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLPRAVLYMIAQCLGAICGVGLVKAFQKSYYDKYGGGANVVAYGYTKGVGLAAEIIGTFILVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFIVHLGTIPITGTGINPARSFGAAVIYGHQKAWDDQWIFWVGPFIGAAIASAYHQYILRAGAMKALGSFRSVPS

SNPs (tot: 12)

Position	A %	C %	G %	T %	Probability
695		18		81	0.999994
696	18			81	0.999994
704	87		12		0.992554
840		16		83	0.994512
943	87		12		0.992554
1117		14	85		0.993533
1118		85	14		0.993533
1176	28			71	1.0
1252		50	33		1.0
1254	33	66			1.0
1255		66	33		1.0
1257			33	66	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain