SustainPineDB

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene5389

Length: 1138 nt

UniGene Fasta

Ace file of the UniGene biog2_v2.0_unigene5389

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene15591	50/50

Source	Descriptions	Term	Type	Identity
AutoFact	putative cinnamoyl CoA reductase [Arabidopsis thaliana]	-	-	38%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	93%
Blast2go	rossmann-fold nad -binding domain-containing protein	-	-	68%

Source	GOs	Term	Type	e value	Identity
Blast2go	response to karrikin	GO:0080167	Biological Process	0.0	68%

Source	InterPros	Term	Type	e value	Identity
Sma3	NAD-dependent epimerase/dehydratase	IPR001509	-	0.0	-
Sma3	NAD(P)-binding domain	IPR016040	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NVV1

Fln msg:

Fln protein: MDAYLEENGYSASNSRKLMCLTGGWSFLGIHIARMLLGRGYSVRFAIPVTPEEAGSLMESEEALSGKLEICQADLLDYRSVFGNINGCSGVFHVPAPCDHLDGLQEYPTDSIDYEVQSALNVVEACAAAESVKRLVFTSSVSAIVCGRRTGNLGDGEIMDEKCWTNLEFCREKKLWSPLAKTLSEKAVWALSNDRDFNLVVVNPASVIGPQLSNPSSHTILNQLKGSKALQQNGISAICAYVDVEEAALAHVAAFECENATGRYICLQRVFTEDEIKEVIWSSHMTSNYRPESLLHPEKPLNLSNEKFLKLKRQYSGELA*

Protein Length: 322

Fln nts: ATGGGGATGGCCTCCCTCTGATCAGAGCTTGAAGCTCTGTCTTCTCTGATATCGCTTCATTCCATCATCCAGGAGCTTCTGTTGTATCCATTCCCTCAAA_-_ATGGATGCCTACCTTGAAGAAAATGGATACAGCGCTTCCAATTCTCGGAAATTAATGTGCCTTACCGGGGGCTGGAGTTTCCTGGGTATTCATATCGCAAGAATGCTGCTCGGCCGGGGTTACTCAGTCCGTTTCGCAATTCCTGTAACGCCAGAAGAGGCAGGCTCACTTATGGAATCCGAAGAAGCATTATCGGGGAAGCTGGAGATATGCCAAGCCGATCTCTTGGATTATCGCAGCGTTTTCGGCAACATCAATGGCTGCTCCGGAGTTTTCCACGTCCCTGCGCCCTGTGATCATCTGGATGGATTACAGGAGTATCCGACTGATAGCATAGACTACGAGGTTCAAAGCGCGTTGAATGTGGTGGAAGCCTGCGCTGCCGCAGAGAGTGTGAAGCGTTTGGTGTTCACTTCCTCTGTATCGGCCATTGTTTGTGGGAGGAGGACTGGCAATCTTGGCGATGGTGAAATTATGGACGAGAAGTGCTGGACCAATCTTGAATTTTGTCGTGAAAAGAAGTTGTGGTCGCCACTGGCAAAGACTCTCTCAGAGAAAGCTGTATGGGCACTCTCAAATGATAGGGACTTTAATCTAGTAGTAGTGAATCCTGCTTCAGTCATTGGGCCCCAACTCTCAAATCCTAGTTCACATACCATTTTAAACCAATTGAAAGGATCGAAGGCACTACAGCAGAATGGTATTTCTGCTATCTGTGCATATGTAGATGTGGAAGAAGCGGCGCTTGCACATGTTGCTGCCTTTGAATGTGAAAATGCAACAGGCAGATACATATGTTTGCAGAGGGTGTTTACAGAAGATGAAATAAAAGAAGTTATATGGAGCTCTCATATGACATCAAATTACAGGCCGGAGAGTTTGTTGCATCCTGAGAAGCCACTGAATCTTTCCAACGAGAAGTTTTTAAAGTTGAAAAGACAATATTCTGGAGAGCTGGCATAG___TTGCACCTACCTCTGATCTGTGGTGGTCAGGTCACGATATATATAAGCAACCAACCAAGTTTAGAGGAAATAAAT

Fln Alignment:

Contig5389___MDAYLEENGYSASNSRKLMCLTGGWSFLGIHIARMLLGRGYSVRFAIPVTPEEAGSLMESEEALSGKLEICQADLLDYRSVFGNINGCSGVFHVPAPCDHLDGLQEYPTDSIDYEVQSALNVVEACAAAESVKRLVFTSSVSAIVCGRRTGNLGDGEIMDEKCWTNLEFCREKKLWSPLAKTLSEKAVWALSNDRDFNLVVVNPASVIGPQLSNPSSHTILNQLKGSKALQQNGISAICAYVDVEEAALAHVAAFECENATGRYICLQRVFTEDEIKEVIWSSHMTSNYRPESLLHPEKPLNLSNEKFLKLKRQYSGELA
A9NVV1_________________MEGYLEENGYGASDSRRLMCVTGGWSFLGIHIARMLLGRGYSVRFAIPVTPEEAGSLVESEEALSGKLEICQADLLDYRSVFGNINGCSGVFHVPAPCDHLDGLQEYPTDSVDYEVQSALNVVEACAGAESVKRLVFTSSVSAIVCGRRIGNLGDGEIMDEKCWTNLEFCREKKLWSPLAKTLSEKAVWALSNDRDLNLVVVNPASVIGPQLSNPNSHTILNQLKGSKALQQNG---MCAYVEVEEAALAHVAAFECENARGRYICLQRVFTEDEIKQVIWSSHMTSNYRPEDLLHPEKPLNVSNEKFLKLKRQYSGELA

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
954		45		54	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain